Single-Cell RNA Transcriptomics and Multi-omics Analyses Reveal the Clinical Effects of Acupuncture on Methadone Reduction by Yiming Chen, Baochao Fan, Jingchun Zeng, Yutian Zou, Chenyang Tao, Chen Chen, Peiming Zhang, Jian Liang, Fangfang Qi, Hailin Tang, Liming Lu

“…Collectively, our results provide clinical and mechanistic evidence supporting acupuncture as a potential adjunct therapy to mitigate the adverse effects of long-term opioid use.…”
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Integrated endogenous hormones and transcriptome analysis contribute to fruit development related gene mining in Eriobotrya japonica by Shoukai Lin, Bisha Wu, Yifang Xiong, Liyan Huang, Dahe Lin, Jingli Lin, Shunquan Lin, Jincheng Wu

“…However, as loquat fruits ripen, the time course changes in endogenous hormones and the transcriptome are still unclear, and the mining of loquat fruit development-related genes is still limited. …”
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Transcriptomics Reveals the Differences in mRNA Expression Patterns in Yak Uterus of Follicular, Luteal, and Pregnant Phases by Shaohui Beng, Daoliang Lan, Yueyue Li, Deping Li, Yuehuan Zhang, Zelang Ma, Jianbo Zhu, Shunyang Liu, Kechao Chen, Jian Li, Peng Wang, Wei Fu

“…This study utilized transcriptomics to identify differentially expressed genes (DEGs) in yaks across uteruses undergoing the follicular phase (UFP) (<i>n</i> = 3/group), luteal phase (ULP) (<i>n</i> = 3/group), and pregnant phase (UPP) (<i>n</i> = 3/group), aiming to depict and compare their transcriptomic characteristics. …”
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Multi-omics analysis reveals associations between gut microbiota and host transcriptome in colon cancer patients by Yuling Qin, Qiang Wang, Qiumei Lin, Fengfei Liu, Xiaolan Pan, Caibiao Wei, Junxian Chen, Taijun Huang, Min Fang, Weilong Yang, Linghui Pan

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Comparative transcriptome analysis reveals a possible mechanism of starvation stress-induced fruit abscission in macadamia by Yu-Chong Fei, Yi Mo, Kai Lin, Liang Tao, Xiyong He, Faquan Ye, Jiajing Xu, Meng Li, Zeng-Fu Xu

“…Therefore, this study aimed to determine the molecular mechanisms involved in physiological fruit abscission in macadamia via comparative transcriptome analysis. Results Macadamia fruits were exposed to carbohydrate starvation stress by girdling plus defoliation (GPD) treatment, which induced mass fruit abscission within a few days. …”
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Transcriptomic comparison analysis across seven developmental stages of the Triatoma rubrofasciata, a vector of Chagas disease by Lei Duan, Yunjia Tian, Ziyi Wang, Limin Yang, Yunhai Guo, Yuanyuan Li, Zhengbin Zhou, Yong Shen, Yi Zhang, Qin Liu

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Transcriptome Analysis Reveals Genes Responsive to Three Low-Temperature Treatments in <i>Arabidopsis thaliana</i> by Bricia Ruiz-Aguilar, Natalia B. Torres-Serrallonga, María Azucena Ortega-Amaro, Arianna Duque-Ortiz, Cesaré Ovando-Vázquez, Juan Francisco Jiménez-Bremont

“…In this study, we analyzed the <i>Arabidopsis thaliana</i> transcriptome to identify differentially expressed genes (DEGs) in 14-day-old plantlets exposed to temperatures of 0 °C, 4 °C, and 10 °C for 24 h, compared to the 22 °C control group. …”
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Integration of GWAS and transcriptomic analyses reveal candidate genes for duck gonadal development during puberty onset by Mengru Xu, Qian Tang, Jingjing Qi, Xu Han, Qiuyu Tao, Yinjuan Lu, Yuan Bai, Shenqiang Hu, Liang Li, Lili Bai, Jiwei Hu, Jiwen Wang, Hehe Liu

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Transcriptome characterisation and population genetics of Cunninghamia konishii Hayata – An endangered gymnosperm and implication for its conservation in Vietnam by Bich Hong Ha, Mai Phuong Pham, Quoc Khanh Nguyen, Thi Tuyet Xuan Bui, Giap Vu, Syed Noor Muhammad Shah, Dinh Duy Vu

“…In this study, the transcriptomes of C. konishii were analysed using the Illumina HiSeqTM 4000 sequencing system and a total of 5,361,856,500 base pairs were generated. …”
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Microplastic and Copper Exposure Effects on Intestinal Gene Expression in Eriocheir sinensis: A Transcriptomics-Based Investigation by Jian XU, Guangpeng FENG, Yunzhi YAN, Jinhui CHEN, Jianhui WU, Zuchang YANG

“…The results of this study revealed the mechanisms of MPs and Cu2+'s effects on the antioxidant, immune defence, and energy metabolism of Eriocheir sinensis, which provides an important theoretical basis for the study of E. sinensis culture and environmental toxicity.…”
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Hydrogen-Sulfide-Mediated PpAOS3-JA Module Provides Insight into Salt Stress Resistance in Peach by Xiaolan Gao, Miao Li, Qingtao Gong, Guixiang Li, Haixiang Yu, Xiaomin Dong, Xiaoyou Wang, Zheng Gong, Zhongtang Wang, Yuansong Xiao, Anning Zhang

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The Role of Lipid Metabolic Reprogramming in the Hibernation of Chipmunks by Mingrui Huang, Chong Wang, Juntao Liu, Qing Liu, Ye Tian, Xiaohui Li, Wei Lu, Dawei Zhang, Huimei Yu

“…Furthermore, the result provides us with a novel perspective to obtain an insight into liver metabolic reprogramming and potential therapeutic strategies for metabolic disease in the liver.…”
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Adaptive circuits for action and value information in rodent operant learning by Alain Rios, Kyohei Fujita, Yoshikazu Isomura, Nobuya Sato

“…The review also covers advances in transcriptome analysis techniques, such as single-cell RNA sequencing, which have provided deeper insights into the gene expression profiles associated with different neuronal populations during operant learning.…”
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Omic tools to study enzyme production from fungi in the Pleurotus genus by Maura Téllez-Téllez, Gerardo Díaz-Godínez

“…The knowledge of the transcriptome and proteome allows one to find valuable enzymes to obtain portable fuels from lignocellulosic materials and provide information oriented to improve the enzymes production through different culture conditions. …”
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Ultrasmall epibiont Nanosynbacter lyticus strain TM7x and host bacteria transcriptional activity after initial host parasitism by Erik L Hendrickson, Batbileg Bor, Kristopher A. Kerns, Lujia Cen, Wenyuan Shi, Xuesong He, Jeffrey S McLean

“…The recovery phase marks a shift in the TM7×/host interaction, switching from the early killing phase, with extensive host cell death, to a stable symbiosis phase where the host and epibiont can grow together.Results Transcriptomes of TM7× and host, XH001, were captured during the recovery phase and compared to uninfected host and the early host/epibiont interaction (initial encounter). …”
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Two-Sample Mendelian Randomization Study Identifies Tissue-Dependent Risk Genes in Autoimmune Diseases by Ryan Chiu, Li Ma

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Transcriptional patterns of cancer-related genes in primary and metastatic tumours revealed by machine learning by Faeze Keshavarz-Rahaghi, Erin Pleasance, Steven J. M. Jones

“…Exploring the interactions between genomic aberrations and the expressed transcriptome can not only improve our understanding of the disease but also identify potential therapeutic approaches. …”
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Bacillus velezensis 20507 promotes symbiosis between Bradyrhizobium japonicum USDA110 and soybean by secreting flavonoids by Yunqing Cheng, Xingtong Jiang, Xinyi He, Zhaoyang Wu, Qiang Lv, Shuang Zhao, Xinyue Zhang, Shuai Wang, Hongli He, Jianfeng Liu

“…Nodulation, plant growth, physiology, and N content were quantified. Transcriptome sequencing of soybean roots under N deficiency compared single and co-inoculation treatments. …”
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Integrated metabolomics and transcriptomics unravel the biosynthZaesis mechanism of anthocyanin in postharvest red raspberry (Rubus idaeus L.) by Huajun Sun, Fangzheng Cui, Ying Liu, Lili Qian, Sijing Zhu, Yue Li

“…The key DAMs in colored raspberries were gentiobioside, pelargonidin-3,5-O-diglucoside, cyanidin-3-O-sambubioside, and pelargonidin-3-O-sambubioside. Transcriptome analysis revealed 32 differentially expressed structural genes linked to anthocyanin and flavonoid synthesis, with significant upregulation of PAL, CHS, F3H, C4H, F3'H, DFR, ANS, CHI, and UFGT genes, which promote anthocyanin synthesis and pigment accumulation. …”
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Effect of consuming blood-substitute feed on the transcriptome of the medicinal leech, Hirudo orientalis Utevsky and Trontelj, 2005 (Clitellata: Hirudinida) by Abbas Torabian, Majidreza Khoshkholgh, Sajad Nazari

“…A de novo-assembled transcriptome revealed 28,485 high-quality contigs with an average size of 598 bp. …”
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