Retrospective Analysis of Transcriptomic Differences between Triple-Negative Breast Cancer (TNBC) and non-TNBC by Çağlar Berkel

“…Conclusion: This study provides further evidence in support of previous research, which show the presence of a large number of molecular differences between TNBC and non-TNBC, pointing to the need for more tailored treatment strategies for patients with TNBC.…”
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The hepatic transcriptome of the turkey poult (Meleagris gallopavo) is minimally altered by high inorganic dietary selenium. by Rachel M Taylor, Kristelle M Mendoza, Juan E Abrahante, Kent M Reed, Roger A Sunde

“…A comparison of differentially expressed transcript sets with high Se transcript sets identified in mice provided high Se (~3 μg Se/g) also failed to identify common differentially expressed transcript sets between these two species. …”
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Genome and transcriptome wide association study identify candidate genes regulating folate levels in maize by Chenglin Zou, Meng Yang, Aihua Huang, Runxiu Mo, Ruining Zhai, Kaijian Huang

“…Candidate genes associated with folate accumulation were further located by integrating transcriptome-wide association studies (TWAS) and genome-wide association studies (GWAS) analyses. …”
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Wolbachia infections in Anopheles gambiae cells: transcriptomic characterization of a novel host-symbiont interaction. by Grant L Hughes, Xiaoxia Ren, Jose L Ramirez, Joyce M Sakamoto, Jason A Bailey, Anne E Jedlicka, Jason L Rasgon

“…We used Affymetrix GeneChip microarrays to investigate the effect of wAlbB and wRi infection on the transcriptome of cultured Anopheles Sua5B cells, and for a subset of genes used quantitative PCR to validate results in somatically-infected Anopheles mosquitoes. …”
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Exogenous Gibberellin Delays Postharvest Leaf Senescence in Pak Choi by Modulating Transcriptomic and Metabolomic Profiles by Dan Wang, Xiuyun Zhao, Tongbing Su, Weihong Wang, Xiaoyun Xin, Bin Zhang, Deshuang Zhang, Yangjun Yu, Zhongjiang Wang, Fenglan Zhang, Linyi Zhou, Peirong Li, Shuancang Yu

“…This study, through a combination of transcriptomic and metabolomic analyses, investigated the effect of exogenous GA on postharvest leaf senescence in pak choi. …”
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Uncovering the molecular signature of feline diffuse iris melanoma through transcriptomic analysis of disease severity by D. Kayes, B. Blacklock, R. McGeachan, E. Scurrell, K. Donnelly, L. Murphy, A. Fawkes, R. Clark, A. Meynert, H. Becher, R. Pittaway, G. Fricker, R. Tetas Pont, A. Suárez-Bonnet, K. L. Bowlt Blacklock

“…Here, we define the transcriptomic landscape of FDIM in treatment-naïve cats using bulk RNA sequencing on laser capture microdissection and core biopsy specimens from formalin-fixed paraffin-embedded tissue. …”
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Transcriptomic Responses to Rapid Cold Hardening in Tomato Leafminer Adults: Implications for Tomato Leafminer Management by Yan Zhao, Farman Ullah, Jiayi Shi, Yingjie Hu, Yuyang Jiang, Youming Hou

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Combining metabolomics and transcriptomics to reveal the effect of β-glucosidase on scopolin in Angelica dahurica var. formosana by Yalan Wang, Han Hu, Zhihui Zhou, Duanyang Li, Feixia Hou, Cheng Peng, Jinhui Bian, Jihai Gao

“…Notably, AdBGLU7 exhibited a higher conversion rate, consistent with its elevated protein expression levels observed in Western blot analysis. This study provides a comprehensive metabolic and transcriptomic profile analysis, enhancing our understanding of coumarin biosynthesis in ADF.…”
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Physiological and transcriptomic evidence revealed the role of exogenous GABA in enhancing salt tolerance in strawberry seedlings by Yunting Zhang, Meiyi Deng, Bangyu Lin, Su Tian, Yan Chen, Shan Huang, Yuanxiu Lin, Mengyao Li, Wen He, Yan Wang, Yong Zhang, Qing Chen, Ya Luo, Xiaorong Wang, Xianjie Gu, Haoru Tang

“…In this study, the physiological and transcriptomic changes in strawberry seedlings treated with GABA under salt stress were investigated to explore the effect of GABA on salt tolerance. …”
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Transcriptomic–proteomic analysis reveals the regulatory mechanisms of Alfalfa (Medicago sativa) in response to Fusarium acuminatum by Zhidan Shi, Zhidan Shi, Hongxia Sun, Lifen Hao, Yongqing Yang, Chen Guo, Haiyan Huangfu, Hongli Huo, Lili Zhao, Jiuru Huangfu, Haijun Ding, Yongyu Fang, Ziqin Li, Yiding Niu

“…This study explores the response mechanism of alfalfa to Fusarium root rot. we used transcriptomic and proteomic methods to analyze differentially expressed genes (DEGs) and differentially expressed proteins (DEPs) in alfalfa inoculated with Fusarium acuminatum on 0, 3, and 13 days. …”
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Identification of candidate genes for leaf size by QTL mapping and transcriptome sequencing in Brassica napus L by Fengjie Cheng, Yuwen Wang, Aoyi Peng, Shuyu Li, Jun Chen, Xiaoxiao Zheng, Jie Xiong, Ge Ding, Bingchao Zhang, Wen Zhai, Laiqiang Song, Wenliang Wei, Lunlin Chen

“…These findings provided further insights into the genetic mechanism of leaf size and built fundamental theory basis for high-density tolerance breeding in rapeseed.…”
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Transcriptomic Characterization of Phototransduction Genes of the Asian Citrus Psyllid <i>Diaphorina citri</i> Kuwayama by Shao-Ping Chen, Xue-Mei Chu, Mei-Xiang Chi, Jian Zhao, Rong-Zhou Qiu

“…A total of 87 genes were identified within the transcriptome as involved in phototransduction based on KEGG functional annotation. …”
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Transcriptome-wide identification and characterization of WUSCHEL-related homeobox (WOX) gene family in Pinus yunnanensis by Junfei Xu, Zhaoliu Hu, Sili Chen, Junrong Tang, Lin Chen, Peizhen Chen, Nianhui Cai, Yulan Xu

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Transcriptomic signatures of severe acute mountain sickness during rapid ascent to 4,300 m by Ruoting Yang, Aarti Gautam, Rasha Hammamieh, Robert C. Roach, Beth A. Beidleman

“…The differential regulation of these pathways provides novel insights into the biological mechanisms underlying AMS. …”
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Cold-Tolerance Candidate Gene Identification in Maize Germination Using BSA, Transcriptome and Metabolome Profiling by Cheng Wang, Nan Hao, Yueming Li, Nan Sun, Liwei Wang, Yusheng Ye

“…These results enrich the information for molecular marker-assisted selection of maize tolerance to low-temperature stress and provide genetic resources for the maize varieties breeding.…”
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Mendelian Randomization and Transcriptomics Analysis Reveal Potential Relationships Between Lipids, Immune Cells and PCOS by Xie Y, Zhang Z, Zhao Y, Zhang J, Yin Q

“…Furthermore, Metabolic inference analysis revealed that fatty acid biosynthesis is closely related to PCOS.Conclusion: Our results provide genetic and transcriptomic evidence substantiating the potential relationship between lipids, immune cells, and PCOS. …”
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Identifying KLF14 as a potential regulatory factor in liver regeneration trough transcriptomic and metabolomic by Chang Liu, Dalong Zhu, Junlong Xue, Alimu Tulahong, Tuerganaili Aji

“…Metabolomic analysis highlighted differentially expressed metabolites associated with lipid, amino acid, and energy metabolism. This study provides new insights into the molecular regulation of liver regeneration, identifying KLF14 and associated metabolic processes. …”
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Genome-wide analysis of the BoBZR1 family genes and transcriptome analysis in Brassica oleracea by Muhammad Asad Ullah, Muhammad Hamza, Rozia Gull, Muhammad Shafiq, Abdul Wahid, Shahab Ahmad, Tayebeh Ahmadi, Mehdi Rahimi

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EM Dipeptide Enhances Milk Protein Secretion: Evidence from Integrated Metabolomic and Transcriptomic Analysis by Yuqing Liu, Yuhao Yan, Runjun Yang, Xiaohui Li, Chuang Zhai, Xuan Wu, Xibi Fang, Boqun Liu

“…<b>Background/Objectives:</b> Breast milk provides essential nutrition and immune protection to support infant growth and development. …”
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Physiological and transcriptomic analysis of the effect of overexpression of the NTPIP2;4 gene on drought tolerance in tobacco by Xu Luo, Yuanshuai Shi, Jie Tan, Tao Long, Juntao Song, Yang Liu

“…This study demonstrates that overexpression of NtPIP2;4 gene can enhance the drought resistance of tobacco plants, which will provide a basis for the research on the function of tobacco NtPIP2;4 gene and the creation of new germplasm resources.…”
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