Whole-transcriptome insights into follicle selection: deciphering key regulatory networks in Luxi gamecock by Yiya Wang

“…To investigate the potential interactions among circRNAs, lncRNAs, and miRNAs, ceRNA networks were constructed.ConclusionThis study provides a detailed characterization of the transcriptomes in SYFs and LYFs of Luxi gamecock through RNA sequencing. …”
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Development of transcriptomic resources for interrogating the biosynthesis of monoterpene indole alkaloids in medicinal plant species. by Elsa Góngora-Castillo, Kevin L Childs, Greg Fedewa, John P Hamilton, David K Liscombe, Maria Magallanes-Lundback, Kranthi K Mandadi, Ezekiel Nims, Weerawat Runguphan, Brieanne Vaillancourt, Marina Varbanova-Herde, Dean Dellapenna, Thomas D McKnight, Sarah O'Connor, C Robin Buell

“…As a diverse set of tissues and treatments were surveyed, expression abundances of transcripts in the three species could be estimated to reveal transcripts associated with development and response to elicitor treatment. Together, these transcriptomes and expression abundance matrices provide a rich resource for understanding plant specialized metabolism, and promotes realization of innovative production systems for plant-derived pharmaceuticals.…”
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Integrative Analysis of Transcriptome and Metabolome Reveals the Regulatory Network Governing Aroma Formation in Grape by Liping Huang, Yue Zhu, Min Wang, Zhili Xun, Xiaohe Ma, Qifeng Zhao

“…A total of 27,228 genes were detected from the transcriptome, and 128 differentially accumulated metabolites (DAMs) were identified. …”
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Immune priming in the insect gut: a dynamic response revealed by ultrastructural and transcriptomic changes by Moritz Baur, Nora K. E. Schulz, Lilo Greune, Zoe M. Länger, Jürgen Eirich, Iris Finkemeier, Robert Peuß, Petra Dersch, Joachim Kurtz

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Distinct platelet transcriptomic heterogeneity in respiratory illnesses and modulation by corticosteroids and immune antibody treatments by Wenjun Song, Kaifeng Jin, Qingqing Wang

“…Conclusions A systematic investigation of platelet transcriptomic heterogeneity in respiratory infections, combined with the delineation of its therapeutic modulation by dexamethasone and tocilizumab, advances the understanding of platelet involvement in immune-thrombotic dysregulation and provides a foundation for exploring potential therapeutic targets.…”
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Impact of modulating leptin sensitivity on the transcriptomic profile of adult-derived hypothalamic mouse neurons by Ewa Ocłoń, Artur Gurgul, Tomasz Szmatoła, Igor Jasielczuk, Miroslaw Kucharski, Joanna Zubel-Łojek, Dorota Anna Zieba

“…These findings help elucidate the molecular mechanisms through which these factors influence leptin sensitivity and provide insights into the pathways implicated in the development of leptin resistance in hypothalamic neurons. …”
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Comprehensive genomic and transcriptomic analyses reveal prognostic stratification for esophageal squamous cell carcinoma by Jian Gao, Qiming Wang, Fangqiu Fu, Yue Zhao, Teng Yang, Xiangze Li, Yihua Sun, Hong Hu, Longfei Ma, Longsheng Miao, Xiaoyang Luo, Ting Ye, Yiliang Zhang, Yang Zhang, Ziling Huang, Hang Li, Longlong Shao, Midie Xu, Kuaile Zhao, Shiyue Zhang, Mou Zhang, Jun Wang, Chong Dai, Xiaoxiao Shang, Tingyi An, Yawei Zhang, Jiaqing Xiang, Zhiwei Cao, Bin Li, Haiquan Chen

“…Here, we conducted genomic and transcriptomic profiling of 203 patients from the ECTOP-2002 study with full clinical information. …”
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Transcriptomic and nutritional analysis of the hepatopancreas in cultured juvenile Panulirus ornatus throughout the moult cycle by Courtney L. Lewis, Basseer M. Codabaccus, Chris G. Carter, Quinn P. Fitzgibbon, Gregory G. Smith, Abigail Elizur, Tomer Ventura

“…Nutritional condition was measured through biochemical composition analysis as well as histological and transcriptomic examination of the hepatopancreas. The rapid accumulation of nutrient reserves was evident by the increase of dry matter and gross energy over the moult cycle. …”
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Transcriptomic insights into early mechanisms underlying post-chikungunya chronic inflammatory joint disease by Mariana Severo Ramundo, Guilherme Cordenonsi da Fonseca, Felipe Ten-Caten, Alexandra L. Gerber, Ana Paula Guimarães, Erika Regina Manuli, Marina Farrel Côrtes, Geovana Maria Pereira, Otavio Brustolini, Milena Gomes Cabral, Carolina Dos Santos Lázari, Patrícia Brasil, Clarisse da Silveira Bressan, Helder I. Nakaya, Gláucia Paranhos-Baccalà, Ana Tereza R. Vasconcelos, Ester Cerdeira Sabino

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Transcriptome Analysis of Pepper Leaves in Response to Tomato Brown Rugose Fruit Virus Infection by Boshen Zhang, Donghai Wang, Mangle Chen, Jiali Yang, Junmin Li, Jianping Chen, Fei Yan, Shaofei Rao

“…Our systematic analysis provides a molecular basis for the response of chili pepper leaves to ToBRFV infection at the transcriptomic level and offers potential candidate genes for further research into the interaction mechanisms between ToBRFV and plant hosts.…”
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Integrated transcriptomics and metabolomics to explore the mechanisms of Elaeagnus mollis diels seed viability decline by Ren Ruifen, Guo Jiayi, Ji Zhe, Du Shuhui, Yang Xiuyun

“…The combined analysis results of transcriptomics and metabolomics further showed that DEGs and DAMs associated with viability were co-enriched in flavonoid biosynthesis and tryptophan metabolism pathways. …”
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Hypothalamus Transcriptome Reveals Key lncRNAs and mRNAs Associated with Fecundity in Goats by Yingshi Wei, Caiye Zhu, Xiaoyun He, Mingxing Chu

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Differential expression and correlation analysis of global transcriptome for obstructive sleep apnea hypopnea syndrome by Ziyi Chen, Guihua Wang, Lichen Song, Yuanyuan Zhang, Guangming Wang

“…This provides more theoretical basis for exploring the complex molecular mechanisms of global transcriptome in the development of OSAHS.…”
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Transcriptome and detoxification enzyme–related gene analysis of the Cydia pomonella response to walnut husks by Xiaoyan Cao, Guangdong Li, Xiaoqin Ye, Adil Sattar

“…This study preliminarily elucidated the detoxification mechanism of C. pomonella in response to walnut husks using transcriptome (total RNA sequencing) analysis and enzyme activity assays. …”
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Comparative transcriptome analysis identified candidate genes associated with kernel row number in maize by Shukai Wang, Yancui Wang, Xitong Xu, Dusheng Lu, Baokun Li, Yuxin Zhao, Senan Cheng, Zhenhong Li, Cuixia Chen

“…Here, two maize inbred lines with contrasting KRN were used to perform transcriptome analysis at five early ear developmental stages. …”
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Time-Series Metabolome and Transcriptome Analyses Reveal the Genetic Basis of Vanillin Biosynthesis in Vanilla by Zeyu Dong, Shaoguan Zhao, Yizhang Xing, Fan Su, Fei Xu, Lei Fang, Zhiyuan Zhang, Qingyun Zhao, Fenglin Gu

“…The findings of this study provide a theoretical foundation and potential target genes for enhancing vanillin production through genetic and metabolic engineering approaches, offering new opportunities for sustainable development in the vanilla industry and related applications.…”
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Dynamic changes in the transcriptome of tropical region-originated king grasses in response to cold stress by Xianjun Lai, Junfeng Yan, Zihan Chen, Yizheng Zhang, Yizheng Zhang, Fan Luo, Guangze Cai, Lang Yan, Lang Yan

“…However, the molecular mechanisms and gene networks regulating cold tolerance in king grass remain largely unknown.MethodsTo address this, we established a full-length reference transcriptome of king grass to enhance assembly quality and performed multiple time-point transcriptomic analyses following cold treatment at 4°C. …”
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Diet-Induced Obesity Alters Granulosa Cell Transcriptome and Ovarian Immune Environment in Mice by Minseo Lee, Sujin Son, Surim Oh, Eunbin Shin, Hyejin Shin, Ohrim Kwon, Sohyun Hwang, Haengseok Song, Hyunjung Jade Lim

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Integration of transcriptome and metabolome reveals tolerance mechanism to high salinity stress in Crassostrea hongkongensis by Yixin Zhang, Qiwen Liang, Feifei Yu, Jiexiong Zhu, Jianfang Gui, Jinji Lin, Yishan Lu, Haiyuan Tao

“…In this study, the transcriptomic and metabolomic were conjointly analyzed to reveal the tolerance mechanism of C. hongkongensis in response to high salinity stress. …”
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SCAN-ACT: adoptive T cell therapy target discovery through single-cell transcriptomics by Stefano Testa, Aastha Pal, Ajay Subramanian, Sushama Varma, Jack Pengfei Tang, Danielle Graham, Sara Arfan, Minggui Pan, Nam Q. Bui, Kristen N. Ganjoo, Sarah Dry, Paul Huang, Matt van de Rijn, Wei Jiang, Anusha Kalbasi, Everett J. Moding

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