Comparative transcriptomics reveal stage-dependent parasitic adaptations in the myxozoan Sphaerospora molnari by Monika M. Wiśniewska, Jiří Kyslík, Gema Alama-Bermejo, Alena Lövy, Martin Kolísko, Astrid S. Holzer, Anush Kosakyan

“…We performed stage-specific transcriptomic profiling to identify differentially expressed key functional gene groups that relate to these functions and provide a fundamental understanding of the mechanisms S. molnari uses to optimize its parasitic lifestyle. …”
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Synergistic transcriptomic and metabolomic analyses in Zi geese ovaries with different clutch lengths by Shengjun Liu, Jiaxin Yin, Kexin Cong, Shan Yue, Yuanliang Zhang, Jinyan Sun, Xiaofang Ren, Ke Jiang, Yunuo Liu, Xiuhua Zhao

“…In summary, this study provides new insights into the genes and molecular markers affecting LCL in Zi geese.…”
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Comparative transcriptomics of atrazine-tolerant and sensitive alfalfa varieties under atrazine stress by Yingao Li, Chunyang Dong, Zeshan Zulfiqar, Haojie Wang, Jiading Lu, Xiaoxia Zhang, Jun Li, Yinghua Shi, Chengzhang Wang, Xiaoyan Zhu, Hao Sun

“…These findings enhance our understanding of how alfalfa tolerates atrazine stress and provide important insights for developing atrazine-tolerant varieties.…”
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Transcriptomics-Based Study of Immune Genes Associated with Subclinical Mastitis in Bactrian Camels by Wanpeng Ma, Huaibin Yao, Lin Zhang, Yi Zhang, Yan Wang, Wei Wang, Yifan Liu, Xueting Zhao, Panpan Tong, Zhanqiang Su

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Unveiling Key Biomarkers and Mechanisms in Septic Cardiomyopathy: A Comprehensive Transcriptome Analysis by Zhao D, Zhuang J, Wang L, Wu L, Xu W, Zhao L, Hong J, Jin W, Miao C

“…This study aimed to identify hub biomarkers in SCM and explore their potential mechanisms.Methods: We utilized the GSE53007 and GSE207363 datasets for transcriptome analysis of normal and SCM mice. Hub biomarkers were identified through a protein–protein interaction (PPI) network and validated using LPS-treated C57/BL6 mice. …”
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Combining Transcriptomics and Proteomics to Screen Candidate Genes Related to Bovine Birth Weight by Xiuyuan Wang, Ruili Liu, Zhenpeng Chen, Renzheng Zhang, Yanfang Mei, Xiuping Miao, Xuejin Bai, Yajuan Dong

“…Methods: We established transcriptome and proteome databases for low-birth-weight (LB) and high-birth-weight (HB) calf placentae, identifying key genes and proteins associated with birth weight through bioinformatics analyses that included functional enrichment and protein–protein interactions (PPIs). …”
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Comparative Transcriptome Analysis of Two Types of Rye Under Low-Temperature Stress by Haonan Li, Jiahuan Zhao, Weiyong Zhang, Ting He, Dexu Meng, Yue Lu, Shuge Zhou, Xiaoping Wang, Haibin Zhao

“…By studying the differential responses of different rye varieties to low-temperature stress at the transcriptome level, we aim to identify key genes and regulatory mechanisms related to cold tolerance. …”
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Integrative Analysis of Plasma Proteomics and Transcriptomics Reveals Potential Therapeutic Targets for Psoriasis by Hesong Wang, Chenguang Wang, Ruihao Qin, Jia He, Xuan Zhang, Chenjing Ma, Shi Li, Lijun Fan, Liuying Wang, Lei Cao

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Transcriptomic profiling and bioinformatic insights into myocardial injury following aneurysmal subarachnoid hemorrhage by Zuoli Wu, Zuoli Wu, Wenbo He, Weihao Ye, Shang Xu, Shengwei Wei, Baozi Huang, Pingping Li, Yanyan Tang, Chao Qin, Ying Liu, Ziming Ye

“…Validation through qRT-PCR in an additional cohort of six subjects confirmed the differential expression of selected genes.ConclusionsThis study successfully constructed the RNA expression profiles in the blood of patients with aSAH-MI through transcriptome sequencing, identifying significant differentially expressed miRNAs, mRNAs, and lncRNAs. …”
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Induced Sputum Transcriptomics Profile and Serum C3 are Associated with Asthma Severity by Du F, Wang H, Chen Z, Xiong W, Wang Q, Li B, Li R, Li L, Shen Y, Zhu T

“…Meanwhile, the AUC of ROC was 0.890 for serum C3 in asthma severity prediction, with the best cut-off of 1.272 g/L.Conclusion: Collectively, this study provides the first identification of the association between induced sputum cells transcriptomics profile and asthma severity, indicating the potential value of transcriptomics for asthma management. …”
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Changes in texture and lignin during different developmental stages of mulberries and transcriptome analysis by WANG Binbin, DAI Xianglong, DU Kaiqun, SHEN Zixin, WANG Hui, GAO Yanxia

“…These findings would provide theoretical references for improving mulberry ripening, preservation, and flavor.…”
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Investigating the Effect of Microcystins on the Transcriptomics of Hepatopancreas in Penaeus vannamei Using Reverse-Gavage by Haiqing YUAN, Rongsheng JIN, Baoran WANG, Daiqiang CHEN, Shuangyong ZHANG, Zhiqiang CHANG

“…The results of the transcriptome sequencing were validated using quantitative real-time PCR.MC-LR induced significant differential expression of 1 994 genes compared to the control group. …”
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Coral-Associated Bacteria Provide Alternative Nitrogen Source for Symbiodiniaceae Growth in Oligotrophic Environment by Yawen Liu, Yanying Hua, Yan Yi, Jicai Liu, Pengcheng Fu

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High quality transcriptome profiling confirms the transcriptional landscape of Treponema pallidum subsp. pallidum by Linda Grillová, Eli M. Carrami, William Roberts-Sengier, Nicholas R. Thomson

“…Our transcriptomic data also revealed, for the first time, the organization of genes into transcription units, an abundance of anti-sense RNAs, and transcripts from intergenic regions, providing crucial insights for future functional genomics studies of TPA.…”
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Bridging the gap between R and Python in bulk transcriptomic data analysis with InMoose by Maximilien Colange, Guillaume Appé, Léa Meunier, Solène Weill, W. Evan Johnson, Akpéli Nordor, Abdelkader Behdenna

“…The first development phase has focused on bulk transcriptomic data, with current capabilities encompassing data simulation, batch effect correction, and differential analysis and meta-analysis.…”
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Comparative transcriptome analysis of midgut of Bombyx mori under a sucrose-supplemented diet by Zhenbin Hu, Lijie Zhan, Xinyi Chen, Jia Li, Meirong Zhang, Pingzhen Xu

“…This study offers a comprehensive analysis of transcriptomic studies on high sucrose intake in silkworm, providing insights into the effects of varying sucrose concentrations on these organisms.…”
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Transcriptomic analysis of male diamondback moth antennae: Response to female semiochemicals and allyl isothiocyanate. by Yueqin Zheng, Qianxia Liu, Houjun Tian, Hui Wei

“…These findings indicate significant changes in ODE expression levels, providing a molecular foundation for identifying potential targets for behavioral inhibitors.…”
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Transcriptome associated with single-cell analysis reveal the role of S-palmitoylation in coronary artery disease by Yiming Xing, Xianhe Lin

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Transcriptome and nutritional composition analysis of stacked transgenic maize with insect resistance and herbicide tolerance by Xiaoxing Yu, Hongyu Gao, Pengfei Wang

“…Currently, profiling methods like transcriptome are employed as supplemental analytical tools to find the unintended effects of transgenic crops. …”
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Characterization of the Transcriptome of the Xerophyte Ammopiptanthus mongolicus Leaves under Drought Stress by 454 Pyrosequencing. by Tao Pang, Lili Guo, Donghwan Shim, Nathaniel Cannon, Sha Tang, Jinhuan Chen, Xinli Xia, Weilun Yin, John E Carlson

“…<h4>Conclusions</h4>The additional transcriptome resources, gene expression profiles, functional annotations, and candidate genes provide a more comprehensive understanding of the stress response pathways in xeric-adapted plant species such as A. mongolicus.…”
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