Transcriptomic Analysis of <i>Trachinotus ovatus</i> Under Flow Velocity Stress by Jing Zhang, Xixi Liu, Jiayue Dai, Sufang Niu, Xuefeng Wang, Baogui Tang

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Transcriptome analyses for revealing leaf abscission of Cyclocarya paliurus stem segments in vitro by Gaoyin Wu, Zhongcheng Peng, Qiuying Li, Xiang Zhang, Shuanggui Geng, Shuang Wang, Enrong Lu, Yingying Liu, Congjun Yuan, Xiaoli Wei, Yingliang Liu

“…The present study illustrates a regulatory mechanism of leaf abscission of C. paliurus stem segments in vitro, which provides potential application value for guiding the inhibition of leaf abscission in vitro.…”
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Transcriptome and metabolome profiling reveal the inhibitory effects of food preservatives on pathogenic fungi by Zhenxia Shi, Ni Zhan, Ming Ma, Zhen Wang, Xunyou Yan, Rumeng Li, Xuejuan Liu

“…To explore the inhibitory mechanism of sec-butylamine on A. flavus, transcriptomic and metabolomic analyses were conducted on A. flavus mycelia before and after treatment. …”
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Integration of metabolomics and transcriptomics analyses reveals the effects of nano-selenium on pak choi by Yanyan Wang, Peiheng Sun, Mingying Nie, Jianyun Zhan, Liu Huang, Junda Wu, Jie Zhang, Xiaowu He, Na Li, Longsong Hu, Shiyu Liu, Chengfu Yuan, Changming Zhou, Guangjie Chen, Jialong Huang, Xiaofei Li

“…Therefore, this study aims to investigate the impact of nano-selenium on pak choi through an integrated analysis of transcriptome and metabolome. Specifically, we examined the effects of different concentrations of nano-selenium (0, 5, 10 and 20 mg L−1) on the growth and nutritional quality of Suzhouqing. …”
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Identification and isolation pipeline for single cell transcriptomic of magnetically enriched tumor cells by Peng Liu, Sitian He, Mette Ø. Agerbæk, Ali Salanti, Leon W.M.M. Terstappen, Pascal Jonkheijm, Michiel Stevens

“…Introduction: The transcriptomic analysis of circulating tumor cells provides valuable insights into cancer metastasis, heterogeneity and the identification of drugable targets. …”
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Unveiling the immunological landscape of disseminated tuberculosis: a single-cell transcriptome perspective by Zhen Gong, Zhen Gong, Hongxiang Xu, Qiao Zhang, Guirong Wang, Lin Fan, Zilu Wang, Lichao Fan, Chang Liu, Yanhong Yu, Zhou Liu, Qiang Zhou, Huasheng Xiao, Rui Hou, Ying Zhao, Yu Chen, Jianping Xie

“…Understanding the underlying immunological characteristics of DTB is crucial for elucidating its pathogenesis.MethodsWe conducted single-cell RNA transcriptome and T cell receptor (TCR) sequencing on samples from seven DTB patients. …”
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Transcriptomic insights into the synergistic effects of darkness and mechanical stimulation on peanut pod development by Lu Huang, Muhammad J. Umer, Hao Liu, Haifen Li, Runfeng Wang, Qianxia Yu, Shaoxiong Li, Rajeev K. Varshney, Manish K. Pandey, Yanbin Hong, Qing Lu, Xiaoping Chen

“…Conclusions Overall, this study provides a comprehensive characterization of the mechanisms underlying peanut pod development in response to darkness and mechanical stimulation. …”
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Integrated transcriptomic analysis reveals evolutionary and developmental characteristics of tendon ossification in teleost by Xu-Dong Wang, Fei-Long Shi, Jia-Jia Zhou, Zheng-Yu Xiao, Tan Tu, Xue-Mei Xiong, Chun-Hong Nie, Shi-Ming Wan, Ze-Xia Gao

“…Results In this study, we systematically analyzed transcriptome data across multiple tissues, species, time points, and resolutions in teleosts. …”
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Comparative Analysis of Ratoon-Competent and Ratoon-Deficient Sugarcane by Hormonal and Transcriptome Profiling by Liping Zhao, Maoyong Ran, Jing Zhang, Peifang Zhao, Fenggang Zan, Jun Zhao, Wei Qin, Qibin Wu, Jiayong Liu, Xinlong Liu

“…The real-time quantitative PCR (qRT-PCR) validation of 12 DEGs corroborated the RNA-seq data, further supporting the reliability of the transcriptomic analysis. This study delineates a clear molecular framework distinguishing ratoon competence, offers novel insights into the molecular basis of perennial regeneration and provides reliable candidate genes for functional marker development in sugarcane breeding.…”
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ABA-induced alternative splicing drives transcriptomic reprogramming for drought tolerance in barley by Anna Collin, Hubert Matkowski, Ewa Sybilska, Asmarany Biantari, Oliwia Król, Agata Daszkowska-Golec

“…While large-scale ABA application poses challenges, this study provides a framework for breeding and agronomic strategies to mimic ABA effects, offering a practical path to enhance drought tolerance and yield stability in barley.…”
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Transcriptomic and metabolomic analyses reveal phenolic metabolism regulated by melatonin in pear peel by Shuai Yan, Liangliang Zhao, Deying Zhao, Gongxun Xu, Yufei Wang, Zhiqin Zhou, Cungang Cheng

“…Methods In this study, the effect of pre-harvest spraying of melatonin on the synthesis of phenolics in pear peel and the regulatory mechanism were investigated using a multi-disciplinary approach, integrating physiological and biochemical, transcriptomic, and metabolic analyses, and the “Yuluxiang” pear as the test material. …”
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Effects of Acorns on Subcutaneous Fat Deposition in Yuxi Black Pigs by Transcriptomic Analysis by Zhe Sun, Dongyang Liu, Siyuan An, Jinzhou Zhang, Lei Lei, Zhiguo Miao

“…The findings of this experiment established a basis for subsequent research into the molecular mechanisms underlying the impact of acorn diets on fat deposition in Yuxi black pigs and provided the scientific evidence to promote the exploitation and industrialization of acorns.…”
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Physiological and transcriptome analysis reveals the mechanism of Gymnocarpos przewalskii response to drought stress by Chao Du, Xinyu Ni, Mengjiao Yan, Qinghan Meng, Junying He

“…This study aimed to evaluate the forage quality of G. przewalskii and investigate the physiological and transcriptomic changes in G. przewalskii response to drought stress. …”
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The developmental transcriptome dynamics of current-year shoot utilized as scion in Camellia chekiangoleosa by Yu Sheng, Haili Gao, Chunlian Yu, Guangyuan Huang, Kunxi Wang, Kailiang Wang, Leyan Lv, Wei Long

“…Conclusions Integrating transcriptomics and physiology defined the dynamic signature of changes in composition of cell wall and gene activity during the development of current-year shoots in C. chekiangoleosa. …”
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Metabolome and Transcriptome Analyses Revealing the Molecular Mechanisms of Precarious Fertility in Quinoa Cultivars by Chao Song, Qingyun Huang, Chunsong Lin, Huihua Li, Ziyang Li, Yiding Xu, Fei Chen, Xueqin Zhang, Zhiqiang Wu, Suxia Xu

“…Quinoa (<i>Chenopodium quinoa</i> Willd) is a tetraploid crop that has provided vital subsistence, nutrition, and medicine for Andean indigenous cultures. …”
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New insights into the transcriptomic profile during the late stages of chicken embryonic development by Di Zhao, Yifan Shi, Jiatai Deng, Bolin Zhong, Yuanyuan Zeng, Qingyuan Ouyang, Haihan Zhang, Zehe Song, Xi He

“…These ceRNA networks provide novel insights and a valuable framework for investigating the molecular regulation of embryonic muscle development in AA broilers and TY chickens.…”
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Transcriptome Sequencing Reveals the Molecular Mechanism of Heat Stroke-Induced Myocardial Injury by Xiang J, Shao S, Huang J, Yang N, Guo F, Tang B, Zhang L

“…In cell experiments, inhibition of Jun expression with Jun inhibitors (SR11302) significantly improved mitochondrial membrane potential and reduced cell apoptosis.Conclusion: Our findings suggested that Jun-mediated mitochondrial apoptosis plays an important role in HS-induced myocardial injury, which provides a new preventive and therapeutic target for HS-induced myocardial injury.Keywords: heat stroke, myocardial injury, apoptosis, jun, transcriptomics…”
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Transcriptome-scale analysis of functional alternative back-splicing events in colorectal cancer by Qianqian Ning, Qian Jin, Lei Zhao, Yudi Wang, Jie Wang, Lili Yang, Ye Han, Qiaoming Zhi, Junnian Zheng, Feifei Chen, Dong Dong

“…Conclusions In conclusion, our work provides the landscape of ABS events in CRC transcriptome and the close association of ABS circRNAs with tumorigenesis offers a new set of targets with potential clinical benefit.…”
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Transcriptomic analysis of the toxic effects and potential mechanisms of fenvalerate on the liver of Odontobutis potamophila by Guoxing Liu, Tian Zhu, Zihan Zhou, You Zheng, Yanhua Zhao, Chen Hao, Shuyan Ding, Xiuhui Tan, Qichen Jiang

“…The results showed that FEN exposure caused tissue damage and oxidative stress in O. potamophila liver in a concentration-dependent manner. Transcriptomic analysis revealed 2083 differentially expressed genes (DEGs) between control (CK) and C0.5 treatments and 2595 DEGs between CK and C2 treatments. …”
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Comparison of Transcriptomic Signatures between Monkeypox-Infected Monkey and Human Cell Lines by Do Thi Minh Xuan, I-Jeng Yeh, Chung-Che Wu, Che-Yu Su, Hsin-Liang Liu, Chung-Chieh Chiao, Su-Chi Ku, Jia-Zhen Jiang, Zhengda Sun, Hoang Dang Khoa Ta, Gangga Anuraga, Chih-Yang Wang, Meng-Chi Yen

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