Combined Genomic and Transcriptomic Screening of Candidate Genes for Asymmetric Oviduct Development in Hens by Ruijie Li, Xiang Song, Xiao Lin, Mingli Deng, Yin Liu, Tuoyu Geng, Daoqing Gong, Minmeng Zhao, Long Liu

Get full text

Plasticity of thermal tolerance and associated gill transcriptome in ballan wrasse (Labrus bergylta) by Peter Almaiz Palma, Michaël Bekaert, Alejandro P. Gutierrez, Elfred John C. Abacan, Herve Migaud, Mónica B. Betancor

“…This study is the first to investigate the thermal tolerance limits of ballan wrasse and provides new data into the plasticity of thermal tolerance limits and molecular response to thermal stimuli in fish.…”
Get full text

Transcriptomic, and metabolic profiling reveals adaptive mechanisms of Auricularia heimuer to temperature stress by Chenhong Nie, Shiyan Wei, Shengjin Wu, Liangliang Qi, Jing Feng, Xiaoguo Wang

“…In summary, our comprehensive analysis of the A. heimuer mycelial transcriptomic and enzymatic responses to sustained temperature fluctuations provides valuable insights into the molecular basis of thermotolerance. …”
Get full text

ProbC: joint modeling of epigenome and transcriptome effects in 3D genome by Emre Sefer

Get full text

Transcriptomic analysis of regulatory mechanisms in the telogen-anagen transition of ovine hair follicles by Ningyue Zhang, Yifan Wang, Jiankui Wang, Liang Zhang, Haoran Sun, Xiaochun Yuan, Siyu Wang, Chunguang Wang, Xinhai LI

“…Conclusion This study highlights critical genes and pathways in the telogen-anagen transition, and transcriptome sequencing along with bioinformatics analysis provides new insights into the regulatory mechanisms of the HF cycle and development.…”
Get full text

Transcriptomic responses to transportation stress in the juvenile Chinese sea bass (Lateolabrax maculatus) by Yue Su, Sarinpan Kokau, Xiao-Ning Zhang, Yun-Wei Dong

“…Transcriptome analysis revealed that 485 and 627 differentially expressed genes (DEGs) were determined in the brain and liver from sea bass after transportation stress, respectively. …”
Get full text

Development of EST-SSR markers based on transcriptome for genetic analysis in Radix Ardisia by Deqiang Ren, Wenwen Wu, Qinqin Wen, Yujiao Li

“…The development of expressed sequence tag-simple sequence repeat (EST-SSR) based on transcriptome strategy is considered to be a very effective means. …”
Get full text

Insights and implications for transcriptomic analysis of heat stress-induced intestinal inflammation in pigs by Zhichao Yu, Yanhong Yong, Xiaoxi Liu, Xingbin Ma, A. M. Abd El-Aty, Leling Li, Ziyuan Zhong, Xingyi Ye, Xianghong Ju

Get full text

Negative effect of seasonal heat stress on testis morphology and transcriptomes in Angora rabbit by Haisheng Ding, Yuanlang Wang, Huiling Zhao, Jinzi Wang, Dongwei Huang

Get full text

Transcriptomics and Metabolomics Reveal the Dwarfing Mechanism of Pepper Plants Under Ultraviolet Radiation by Zejin Zhang, Zhengnan Yan, Xiangyu Ding, Haoxu Shen, Qi Liu, Jinxiu Song, Ying Liang, Na Lu, Li Tang

“…In the present study, we provided supplementary ultraviolet-B (UV-B, 280–315 nm) light to pepper plants grown in a greenhouse to assess the influences of UV-B on pepper growth, with an emphasis on the molecular mechanisms mediated through the gibberellin (GA) signaling pathway. …”
Get full text

Transcriptome analysis reveals genes associated with the bitter-sweet trait of apricot kernels by Yu Zhang, Wenquan Bao, Ta-na Wuyun, Mengzhen Huang, Chen Chen, Dun Ao, Rong Yang, Haiguang Huang, Lin Wang

“…In this study, we analyzed the phenotype and transcriptome of kernels during development in Prunus sibirica (bitter kernels) and Prunus armeniaca × Prunus sibirica (kernel consumption apricot, sweet kernels). …”
Get full text

Exploring the Metabolic and Transcriptomic Profiles of Tetrastigma hemsleyanum for Tissue-Specific Compound Accumulation by Lingxia Peng, Hongju Li, Lijun Yang, Zongsuo Liang, Zongsuo Liang, Xiaodan Zhang

“…To explore the medicinal components from different parts of the plant and to fully utilize T. hemsleyanum, this study investigated the mechanisms underlying the differential accumulation of metabolites in its tuberous roots, fibrous roots, and leaves.MethodsThis study employed a combination of metabolomics and transcriptomics to analyze the metabolic profiles of T. hemsleyanum. …”
Get full text

Deciphering Transcriptomic and Metabolomic Wood Responses to Grapevine Trunk Disease-Associated Fungi by Ana Romeo-Oliván, Justine Chervin, Coralie Breton, Virginie Puech-Pagès, Sylvie Fournier, Guillaume Marti, Olivier Rodrigues, Jean Daydé, Bernard Dumas, Alban Jacques

“…However, the molecular mechanisms underlying plant defense responses in the grapevine trunk against esca-associated pathogens are poorly understood. To provide a first glimpse at the trunk responses to P. minimum and P. chlamydospora, transcriptomic and metabolomic analyses were performed to compare and contrast host responses to these pathogens. …”
Get full text

Transcriptomic and Metabolomic Insight into the Roles of α-Lipoic Acid in the Antioxidant Mechanisms of Sheep by Zhaohui Yao, Gaiying Li, Xinlu Yang, Liyang Zhang, Chuanyou Su, Tong Fu, Linfeng Wang, Hongxia Lian, Tengyun Gao, Kaizhen Liu

“…In conclusion, the present study demonstrated that α-LA improved antioxidant activity by regulating PPP and 2-oxocarboxylic acid metabolism. This study will provide a theoretical basis for the application of α-LA in the raising of sheep.…”
Get full text

Integrated metabolomic and transcriptomic analyses of flavonoid accumulation in different cultivars of Platostoma palustre by Jiankai You, Zhongdong Wang, Lishan Zeng, Yimeng Xia, Ying Lin, Ruoting Zhan, Guifang Zhang

“…In this study, metabolomic and transcriptomic analyses were performed to elucidate the regulatory mechanisms of flavonoid synthesis in P. palustre and to provide a theoretical basis for the identification, differentiation and breeding cultivation of different cultivars of P. palustre.…”
Get full text

Exploring sphingolipid metabolism-related biomarkers for Parkinson’s disease: a transcriptomic analysis by Guohong Wang, Xingnan Zhou, Xingnan Zhou

“…However, the role of sphingolipid metabolism-related genes (SMRGs) in Parkinson’s Disease (PD) have not been fully elucidated.MethodsIn this study, PD-related transcriptome data were extracted from the Gene Expression Omnibus (GEO) database. …”
Get full text

Integration of Genomics and Transcriptomics to Predict Sepsis-Associated Acute Lung Injury Genes by Qiong Wu, Yingyuan Tang, Fenghua Zhang, Ping Zeng, Xiaochun Zeng, Yuanwei Liu

Get full text

Dynamic changes in the transcriptome and metabolome of pig ovaries across developmental stages and gestation by Binyun Pan, Jin Chai, Kaixin Fei, Ting Zheng, Yanzhi Jiang

“…Conclusions This study revealed the dynamic changes in the transcriptome and metabolome of pig ovaries across developmental stages and gestation, indicating that it may provide new theoretical insights for improving sow fertility.…”
Get full text

Abnormal Peripheral Neutrophil Transcriptome in Newly Diagnosed Type 2 Diabetes Patients by Qiuqiu Lin, Wenzhi Zhou, Yanfei Wang, Juan Huang, Xiaoyan Hui, Zhiguang Zhou, Yang Xiao

“…Our study reveals an abnormal activation of circulating neutrophils at the transcriptome level in type 2 diabetes patients. These findings suggest a potential involvement of neutrophil dysfunction in the pathologic process of type 2 diabetes and provide insight into potential therapeutic targets for type 2 diabetes.…”
Get full text

Transcriptomic analysis of the liver, jejunum, and uterus in different production stages of laying hens by Gi Ppeum Han, Byeonghwi Lim, Jun-Mo Kim, Deok Yun Kim, Hyun Woo Kim, Dong Yong Kil

“…The current findings pave the way for future investigations into the physiological changes in laying hens across different production stages. This research also provides a foundation for elucidating the multi-tissue transcriptome in laying hens and identifying potential genes regulating various biological processes during overall laying periods.…”
Get full text