A map of cell type‐specific auxin responses by Bastiaan O R Bargmann, Steffen Vanneste, Gabriel Krouk, Tal Nawy, Idan Efroni, Eilon Shani, Goh Choe, Jiří Friml, Dominique C Bergmann, Mark Estelle, Kenneth D Birnbaum

“…This data set and comparative analysis provide a transcriptome‐level spatial breakdown of the response to auxin within an organ where this hormone mediates many aspects of development.…”
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Borrelia PeptideAtlas: A proteome resource of common Borrelia burgdorferi isolates for Lyme research by Panga J. Reddy, Zhi Sun, Helisa H. Wippel, David H. Baxter, Kristian Swearingen, David D. Shteynberg, Mukul K. Midha, Melissa J. Caimano, Klemen Strle, Yongwook Choi, Agnes P. Chan, Nicholas J. Schork, Andrea S. Varela-Stokes, Robert L. Moritz

“…Here, we applied both transcriptome analysis and mass spectrometry-based proteomics to assemble peptide datasets of B. burgdorferi laboratory isolates B31, MM1, and the infective isolate B31-5A4, to provide a publicly available Borrelia PeptideAtlas. …”
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The Sexual Dimorphism in Rectum and Protein Digestion Pathway Influence Sex Pheromone Synthesis in Male Bactrocera Dorsalis by Jingxiang Chen, Yanling Jiang, Zijie Gao, Jiawang Dai, Chunsheng Jia, Yongyue Lu, Daifeng Cheng

“…In vitro and in vivo experiments reveal that ammonium is vital for sex pheromone synthesis in rectal Bacillus strains. Comparative transcriptome analysis identified ammonium‐producing genes (carboxypeptidase B and peptide transporter) in the protein digestion pathway that show much higher expression in the male rectum than in the female rectum. …”
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A Point Mutation of the Alpha-Tubulin Gene <i>ClTUA</i> Causes Dominant Dwarf Phenotype in Watermelon (<i>Citrullus lanatus</i>) by Ziwei Hu, Leichen Zhang, Jun Shi, Quansheng Ying, Huafeng Zhang, Xingping Zhang, Yun Deng, Yuhong Wang

“…This study provides new germplasm resources and a theoretical foundation for plant architecture breeding in watermelon.…”
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A cell type-specific expression atlas of small and total RNA in the heart after myocardial infarction by Ranjan Kumar Maji, Ariane Fischer, Eva-Maria Rogg, Melanie Möller, Gilles Gasparoni, Martin Simon, Stefanie Dimmeler, Marcel H. Schulz

“…All in all, the RNA expression atlas provides a useful resource to study different roles of RNAs in major cell types of the heart after AMI.…”
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FGF7 secreted from dermal papillae cell regulates the proliferation and differentiation of hair follicle stem cell by Niu Wang, Weidong Zhang, Zhenyu Zhong, Xiongbo Zhou, Xinran Shi, Xin Wang

“…Electrophoretic mobility shift assay (EMSA) demonstrated that FGF7 interacts with the promoter region of CISH and PRKX. This research provides valuable insights into the molecular mechanisms underlying the hair cycle. …”
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Identification and validation of the fibrosis-related molecular subtypes of hepatocellular carcinoma by bioinformatics by Ling-li Liu, Wei-lin Cao, Jian-sheng Chen, Jian-ping Wang

“…The FRGs-based subtype and signature explain the HCC heterogeneity, which might provide a new method to develop a more efficient treatment.…”
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Hydrolysis of palm kernel meal fibre using a newly isolated Bacillus subtilis F6 with high mannanase activity by Wei Li Ong, Kam Lock Chan, Antonius Suwanto, Zhi Li, Kian-Hong Ng, Kang Zhou

“…This study highlights the potential of B. subtilis F6 and its mannanase GmuG for efficient PKM fibre hydrolysis, and provides insights into their application in the valorization of mannan-rich bioresources. …”
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Seed Priming with 2,4-Epibrassionolide Enhances Seed Germination and Heat Tolerance in Rice by Regulating the Antioxidant System and Plant Hormone Signaling Pathways by Jingya Qian, Xu Mo, Yue Wang, Qiang Li

“…This study provides new insights into the application of rice seed priming techniques.…”
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Altering the redox status of Chlamydia trachomatis directly impacts its developmental cycle progression by Vandana Singh, Scot P Ouellette

“…For the first time, our study provides a mechanism of chlamydial secondary differentiation dependent on redox status.…”
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Ox-LDL induces a non-inflammatory response enriched for coronary artery disease risk in human endothelial cells by Jiahao Jiang, Thomas K. Hiron, Anil Chalisey, Yashaswat Malhotra, Thomas Agbaedeng, Chris A. O’Callaghan

“…Our results reveal that the exposure of HAECs to ox-LDL leads to pathogenic changes in metabolism, transcriptome and epigenome, but in the absence of a typical inflammatory endothelial phenotype. …”
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Wnt Inhibition Safeguards Porcine Embryonic Stem Cells From the Acquisition of Extraembryonic Endoderm Cell Fates by Hanning Wang, Liang Zhong, Zhuangfei Wang, Jinzhu Xiang, Duanqing Pei

“…The resulting XEN cells from ESCs exhibit similar transcriptome and chromatin accessibility features to XEN cells from embryos and contribute to mouse extraembryonic tissues. …”
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Identification of the Valine-Glutamine gene family in Chenopodium quinoa Willd and analysis of its expression pattern and subcellular localization under drought stress by Dongfang Zhang, Xiaolin Zhu, Xuefen Du, Xian Wang, Baoqiang Wang, Xiaohong Wei

“…This discovery provides an important candidate gene for drought response studies in quinoa and lays the foundation for further exploration of the molecular mechanisms of the VQ gene family in response to drought stress.…”
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Reliable RNA-seq analysis from FFPE specimens as a means to accelerate cancer-related health disparities research. by Mitchell J Frederick, Dannelys Perez-Bello, Pedram Yadollahi, Patricia Castro, Alan Frederick, Andrew Frederick, Rashid A Osman, Fonma Essien, Imelda Yebra, Ashley Hamlin, Thomas J Ow, Heath D Skinner, Vlad C Sandulache

“…Whole transcriptome sequencing (WTS/ RNA-Seq) is a ubiquitous tool for investigating cancer biology. …”
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Gene expression profiles identify key factors in inflammatory odontoblastic dental pulp stem cell differentiation via TNFα/C5L2 by Muhammad Irfan, Ji Hyun Kim, Sreelekshmi Sreekumar, Seung Chung

“…RNA-seq techniques provide insight into the transcriptome of a cell, offering higher coverage and greater resolution of its dynamic nature.ResultsFollowing inflammatory stimulation, DPSCs exhibit significantly altered gene profiles, including marked up-regulation of key odontogenic genes, highlighting the critical role of inflammation in dentinogenesis. …”
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Induced resistance to Fusarium wilt of banana caused by Tropical Race 4 in Cavendish cv Grand Naine bananas after challenging with avirulent Fusarium spp. by Fernando A García-Bastidas, Rafael Arango-Isaza, Hector A Rodriguez-Cabal, Michael F Seidl, Giulio Cappadona, Rafael Segura, Maricar Salacinas, Gert H J Kema

“…The data support the hypothesis that activating resistance to Race 1 in Cavendish bananas affects TR4 development and provide a first insight of gene expression during the interaction between various Fusarium spp. and banana.…”
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Developmental and neurobehavioral toxicity of benzotriazole ultraviolet stabilizer UV-360 on zebrafish larvae. by Lihan Xu, Donglai Sheng, Rong He, Yanlong Meng, Lili Tian, Yuhao Luo, Yingjia Wang, Rusidanmu Aizemaiti, Zhou An, Yuying Wang

“…These findings contribute significantly to the understanding of the toxicological effects of UV-360 on zebrafish larvae and provide strong evidence to help clarify the mechanisms of UV-360-induced toxicity.…”
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Molecular insights into Solanum sisymbriifolium’s resistance against Globodera pallida via RNA-seq by Raquel Varandas, Cristina Barroso, Isabel Luci Conceição, Conceição Egas

“…Gene ontology (GO) enrichment analysis provided insights into the response of the plant to nematode infection, indicating an activation of the plant metabolism, oxidative stress leading to defence mechanism activation, and modification of the plant cell wall. …”
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Identification of Y-box binding protein 1 as a core regulator of MEK/ERK pathway-dependent gene signatures in colorectal cancer cells. by Karsten Jürchott, Ralf-Jürgen Kuban, Till Krech, Nils Blüthgen, Ulrike Stein, Wolfgang Walther, Christian Friese, Szymon M Kiełbasa, Ute Ungethüm, Per Lund, Thomas Knösel, Wolfgang Kemmner, Markus Morkel, Johannes Fritzmann, Peter M Schlag, Walter Birchmeier, Tammo Krueger, Silke Sperling, Christine Sers, Hans-Dieter Royer, Hanspeter Herzel, Reinhold Schäfer

“…We also validated the MAPK-dependent gene signature in colorectal cancers and provided evidence for the association of YBX1 with poor prognosis in colorectal cancer patients. …”
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Novel ribosome biogenesis-related biomarkers and therapeutic targets identified in psoriasis by Jinghua Liu, Nana Luo, Wenyi Ma, Zeyun Qiao, Xiaojing Zhong, Zilin Cheng, Pingsheng Hao, Chengzhi lv

“…We first obtained bulk transcriptome and single-cell RNA sequencing datasets from the GEO database. …”
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