RNA-seq analysis of host and viral gene expression highlights interaction between varicella zoster virus and keratinocyte differentiation. by Meleri Jones, Inga R Dry, Dan Frampton, Manuraj Singh, Ravinder K Kanda, Michael B Yee, Paul Kellam, Michael Hollinshead, Paul R Kinchington, Edel A O'Toole, Judith Breuer

“…At the same time, analysis of the viral transcriptome provided evidence that VZV gene expression was significantly increased following calcium treatment of keratinocytes. …”
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Hypoxia‐Driven Neurovascular Impairment Underlies Structural‐Functional Dissociation in Diabetic Sudomotor Dysfunction by Xu Guo, Chao Zhang, Yuzhen Wang, Zhao Li, Yaxin Tan, Dongzhen Zhu, Wei Song, Yi Kong, Jinpeng Du, Yuyan Huang, Liting Liang, Jianjun Li, Mengde Zhang, Linhao Hou, Qinhua Liu, Feng Tian, Bingyang Yu, Yue Kong, Zhenyu Zhou, Xiaobing Fu, Sha Huang

“…In addition, histological staining and tissue clearing techniques provided evidence of impaired neurovascular networks adjacent to SGs. …”
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Leucine-rich pentatricopeptide repeat-containing protein (LRPPRC)-stabilized lncRNA small nucleolar RNA host gene 15 (Snhg15) modulates hematopoietic injury induced by γ-ray irradi... by Shuqin Zhang, Yajia Cheng, Yujia Gao, Feifei Xu, Yuna Wang, Junling Zhang, Yue Shang, Deguan Li, Saijun Fan

“…LncRNA Snhg15 was identified as a key regulator through integration analysis of the methylome and transcriptome data. Its m6A modification was closely related to progression of radiation injury in BMCs. …”
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Transgenerational inheritance of diabetes susceptibility in male offspring with maternal androgen exposure by Yuqing Zhang, Shourui Hu, Shan Han, Congcong Liu, Xiaofan Liang, Yuxuan Li, Zongxuan Lin, Yiming Qin, Chunxuan Geng, Yue Liu, Linlin Cui, Jingmei Hu, Changming Zhang, Zhao Wang, Xin Liu, Jinlong Ma, Zi-Jiang Chen, Han Zhao

“…Our findings highlight the transgenerational inheritance of impaired glucose homeostasis in male offspring from maternal AE via DNA methylation changes, providing methylation biomarkers and therapeutic strategies to safeguard future generations’ metabolic health.…”
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Bridging the Gap: Biofilm-mediated establishment of Bacillus velezensis on Trichoderma guizhouense mycelia by Jiyu Xie, Xinli Sun, Yanwei Xia, Lili Tao, Taimeng Tan, Nan Zhang, Weibing Xun, Ruifu Zhang, Ákos T. Kovács, Zhihui Xu, Qirong Shen

“…These intricate biofilm-mediated BFI dynamics might contribute to the remarkable diversity observed within soil microbiota, providing a fresh perspective for further exploration of BFIs in the plant rhizosphere.…”
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Identification and predictive machine learning models construction of gut microbiota associated with lymph node metastasis in colorectal cancer by Yongzhi Wu, Chengen Deng, Zigui Huang, Yongqi Huang, Chuanbin Chen, Mingjian Qin, Zhen Wang, Fuhai He, Shenghai Liu, Rumao Zhong, Jun Liu, Chenyan Long, Jungang Liu, Weizhong Tang, Xiaoliang Huang

“…Furthermore, using transcriptome data from 23 CRC patients, we constructed an immune cell infiltration matrix to deeply explore the biological functions associated with LNM. …”
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Fission Yeast CSL Transcription Factors: Mapping Their Target Genes and Biological Roles. by Martin Převorovský, Martina Oravcová, Jarmila Tvarůžková, Róbert Zach, Petr Folk, František Půta, Jürg Bähler

“…<h4>Conclusions/significance</h4>Our results provide a framework for a more detailed understanding of the role of CSL proteins in the regulation of cell-cycle progression in fission yeast.…”
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Genome-wide landscape of miRNA-mRNA-lncRNA-circRNA ceRNA network in Nanos2 deficient mice. by Hongyi Li, Yuan Li, Yuting Wang, Lijian Liu, Ji Cui, Mao Zhang, Yiming Yan

“…To identify the probable ceRNA regulator involved in the process of spermatogenesis by Nanos2, whole transcriptome sequencing was performed in the testes between Nanos2 knock out mice and wild type mice. …”
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Identification of key genes associated with anthracnose resistance in Camellia sinensis. by Li-Yi Xu, Jing-Jing Su, Cheng-Kang Zhang, Min Hao, Zi-Wei Zhou, Xiao-Hui Chen, Shi-Zhong Zheng

“…Using the 'Longjing 43' reference genome, transcriptome assembly achieved 93.9% gene detection rate (31,509/33,557 genes). …”
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Chromosome-level phased genome assembly of the argan tree Sideroxylon spinosum by Ivan D. Mateus, Abdellatif Essahibi, Pamela Nicholson, Mohamed Hijri, Ahmed Qaddoury, Laurent Falquet, Didier Reinhardt

“…This high-quality assembly provides a valuable resource for future research on argan biology, genetic diversity, and traits relevant to adaptation and oil biosynthesis.…”
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RES complex is associated with intron definition and required for zebrafish early embryogenesis. by Juan Pablo Fernandez, Miguel Angel Moreno-Mateos, Andre Gohr, Liyun Miao, Shun Hang Chan, Manuel Irimia, Antonio J Giraldez

“…Pre-mRNA splicing is a critical step of gene expression in eukaryotes. Transcriptome-wide splicing patterns are complex and primarily regulated by a diverse set of recognition elements and associated RNA-binding proteins. …”
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Expression of a pheromone binding protein affected by timeless gene governs female mating behavior in Bactrocera dorsalis by Yuting Jiao, Guohong Luo, Yongyue Lu, Daifeng Cheng

“…Behavioral and electrophysiological assays revealed a peak in both mating behavior and response to sex pheromones in the evening in females. Comparative transcriptome analysis of female heads demonstrated rhythmic expression of the Timeless gene-Tim and odorant binding protein gene-Pbp5, with the highest expression levels occurring in the evening. …”
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Chromosome–level genome assembly of the seasonally polyphenic scorpionfly (Panorpa liui) by Jiuzhou Liu, Yuetian Gao, Shuangmei Ding, Shuai Zhan, Ding Yang, Xiaoyan Liu

“…The high-quality genome provides critical genomic resources for population genetics and phylogenetic research on Mecoptera. …”
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Phase-specific transcriptional patterns of the oomycete pathogen Phytophthora sojae unravel genes essential for asexual development and pathogenic processes. by Min Qiu, Mengjun Tian, Saijiang Yong, Yaru Sun, Jingting Cao, Yaning Li, Xin Zhang, Chunhua Zhai, Wenwu Ye, Ming Wang, Yuanchao Wang

“…Thus, these findings provide a foundation for further gene functional annotation in oomycetes and crop disease management.…”
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Emergence of carbapenem resistance in persistent Shewanella algae bacteremia: the role of pdsS G547W mutation in adaptive subpopulation dynamics by Yao-Ting Huang, Po-Yu Liu

“…Intriguingly, we observed a recurrent switch between wild-type and G547W alleles, revealing an adaptive expansion and contraction of underlying cell subpopulations in response to β-lactam exposure. Comparative transcriptome analyses further demonstrated the overexpression of genes pivotal for membrane integrity, biofilm formation, immune evasion, and β-lactamase activation in resistant samples. …”
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Single-molecule direct RNA sequencing reveals the shaping of epitranscriptome across multiple species by Ying-Yuan Xie, Zhen-Dong Zhong, Hong-Xuan Chen, Ze-Hui Ren, Yuan-Tao Qiu, Ye-Lin Lan, Fu Wu, Jin-Wen Kong, Ru-Jia Luo, Delong Zhang, Biao-Di Liu, Yang Shu, Feng Yin, Jian Wu, Zigang Li, Zhang Zhang, Guan-Zheng Luo

“…Yet, fully characterizing its transcriptome-wide landscape and biogenesis mechanisms remains challenging. …”
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Evaluating the sustainable cultivation of 'Fuji' apples: suitable crop load and the impact of chemical thinning agents on fruit quality and transcription by Shicong Wang, Qianying Wang, Weiyu Jiang, Yixiong Wang, Jinjiao Yan, Xuewei Li, Jiangbo Wang, Qingmei Guan, Fengwang Ma, Jing Zhang, Qianming Zheng, Yangjun Zou, Jidi Xu

“…The optimal load capacity provides sustainable production and high quality in 'Fuji' apple production. …”
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Probing host pathogen cross-talk by transcriptional profiling of both Mycobacterium tuberculosis and infected human dendritic cells and macrophages. by Ludovic Tailleux, Simon J Waddell, Mattia Pelizzola, Alessandra Mortellaro, Michael Withers, Antoine Tanne, Paola Ricciardi Castagnoli, Brigitte Gicquel, Neil G Stoker, Philip D Butcher, Maria Foti, Olivier Neyrolles

“…<h4>Conclusions/significance</h4>This study provides the proof of principle that probing the host and the microbe transcriptomes simultaneously is a valuable means to accessing unique information on host pathogen interactions. …”
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Brain-derived exosomal hemoglobin transfer contributes to neuronal mitochondrial homeostasis under hypoxia by Zhengming Tian, Yuning Li, Feiyang Jin, Zirui Xu, Yakun Gu, Mengyuan Guo, Qianqian Shao, Yingxia Liu, Hanjiang Luo, Yue Wang, Suyu Zhang, Chenlu Yang, Xin Liu, Xunming Ji, Jia Liu

“…This study conducted combined analyses of single-nucleus transcriptome sequencing and extracellular vesicle transcriptome sequencing on hypoxic mouse brains, described cell–cell communication in the brain under hypoxia from intercellular and extracellular dimensions, confirmed that hemoglobin mRNA was transferred from non-neuronal cells to neurons, and eventually expressed. …”
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RNA modification gene WDR4 facilitates tumor progression and immunotherapy resistance in breast cancer by Yongzhou Luo, Wenwen Tian, Da Kang, Linyu Wu, Hailin Tang, Sifen Wang, Chao Zhang, Yi Xie, Yue Zhang, Jindong Xie, Xinpei Deng, Hao Zou, Hao Wu, Huan Lin, Weidong Wei

“…Alterations of tumor immune microenvironment and therapy response featured by different RMscore levels were assessed by bulk transcriptome, single-cell transcriptome and genomics analyses. …”
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