Transcriptome sequencing analysis of bovine mammary epithelial cells induced by lipopolysaccharide by Jingjing Liu, Yingkui Gao, Xing Zhang, Zhonghua Hao, Huaqiang Zhang, Rong Gui, Fang Liu, Chao Tong, Xuebing Wang

“…Furthermore, the expression of GRO1 and CXCL3 mRNAs increased significantly after LPS treatment. These findings provide new insights for the treatment of mastitis in cows in the future.…”
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Analysis of single-cell and spatial transcriptomics in TNBC cell-cell interactions by Yan Xin, Qiji Ma, Qiang Deng, Tielin Wang, Dongxu Wang, Gang Wang

“…The present study provides an overview of the technical characteristics of scRNA-seq and ST, highlighting their applications in exploring TNBC heterogeneity, cell spatial distribution patterns, and intercellular interactions. …”
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transcriptome sequencing and gene expression profiling with/without B-chromosome plants of by Doori Park, Jong-Hwa Kim, Nam-Soo Kim

“…Functional enrichment analysis revealed that various differentially expressed genes were involved in cellular processes including the cell cycle, chromosome breakage and repair, and microtubule formation; all of which may be related to the occurrence and maintenance of B chromosomes. Our data provide insight into transcriptomic changes and evolution of plant B chromosomes and deliver an informative database for future study of B chromosome transcriptomes in the Korean lily.…”
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Time-resolved transcriptomics of S. cerevisiae and S. pastorianus in response to plasma membrane stresses by Yuta Yamazaki, Fumihiko Omura, Eiichiro Ono, Nozomu Kamada, Keiko Kono

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Transcriptome Analysis of Two Different Developmental Stages of Paeonia lactiflora Seeds by Yonglei Ma, Jinqiu Cui, Xiujun Lu, Lijie Zhang, Zhijing Chen, Riwen Fei, Xiaomei Sun

“…This is the first report of sequencing the P. lactiflora seed transcriptome. Our results provide fundamental frame work and technical support for further selective breeding and cultivation of Paeonia. …”
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Combining metabolomic and transcriptomic approaches to assess and improve crop quality traits by Delphine M. Pott, Sara Durán-Soria, Sonia Osorio, José G. Vallarino

“…Recent technical advances in high throughput metabolomic, transcriptomic and genomic platforms have provided efficient approaches to identify new genes and pathways responsible for the extremely diverse plant metabolome. …”
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Metabolomics and Transcriptome Analysis of Rapeseed Under Salt Stress at Germination Stage by Menglin Zhou, Xi Song, Qingqing Yu, Bingbing Dai, Wei Zhou, Xiaofei Zan, Wuming Deng

“…This study integrates transcriptomic and metabolomic analyses to elucidate the molecular and physiological mechanisms underlying the salt stress response during the germination of the rapeseed variety ZS11. …”
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IFIT2-induced transcriptomic changes in Mycobacterium tuberculosis infected macrophages by Ewura-Esi Manful, Ray-Dean Pietersen, Bienyameen Baker

“…RT-qPCR validation confirmed the upregulation of selected DEGs (ISG15, CMPK2, RSAD2, IFI44L, IFI44), corroborating the AmpliSeq data. This study provides comprehensive insights into the transcriptomic profile induced by IFIT2 in TB, revealing critical downstream contributors and pathways that underpin IFIT2’s ability to combat M. tb infection.…”
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The effect on the transcriptome of Anemone coronaria following infection with rust (Tranzschelia discolor). by Marina Laura, Cristina Borghi, Valentina Bobbio, Andrea Allavena

“…In order to understand plant/pathogen interaction, the transcriptome of uninfected (1S) and infected (2I) plant was sequenced at 3'end by the GS FLX 454 platform. …”
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Dynamic prostate cancer transcriptome analysis delineates the trajectory to disease progression by Marco Bolis, Daniela Bossi, Arianna Vallerga, Valentina Ceserani, Manuela Cavalli, Daniela Impellizzieri, Laura Di Rito, Eugenio Zoni, Simone Mosole, Angela Rita Elia, Andrea Rinaldi, Ricardo Pereira Mestre, Eugenia D’Antonio, Matteo Ferrari, Flavio Stoffel, Fernando Jermini, Silke Gillessen, Lukas Bubendorf, Peter Schraml, Arianna Calcinotto, Eva Corey, Holger Moch, Martin Spahn, George Thalmann, Marianna Kruithof-de Julio, Mark A. Rubin, Jean-Philippe P. Theurillat

“…Here, we overcome these hurdles and generate a comprehensive prostate cancer transcriptome atlas that describes the roadmap to tumor progression in a qualitative and quantitative manner. …”
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Transcriptomic Profiling in Low-Risk Thyroid Cancer Induced by Microwave Ablation by Huarong Li, Lei Liang, Jianming Li

“…This study aims to explore the transcriptomic profiling of the immune response in PBMCs induced by microwave ablation (MWA) in low-risk thyroid cancer. …”
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Spatial transcriptomics in autoimmune rheumatic disease: potential clinical applications and perspectives by Atsuko Tsujii Miyamoto, Hiroshi Shimagami, Atsushi Kumanogoh, Masayuki Nishide

“…In the field of rheumatology, the complex and elusive pathophysiology of diseases such as rheumatoid arthritis, systemic lupus erythematosus, and Sjögren’s syndrome remains a challenge for personalized treatment. Spatial transcriptomics provides insights into how different cell populations interact within disease foci, such as the synovial tissue, kidneys, and salivary glands. …”
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Multidimensional Transcriptomics Reveals the Key Genes and Pathways Regulating the Acidity of Apples by Wenyuan Yang, Hang Yu, Lian Tao, Hongjiang Xie

“…Additionally, we performed qRT-PCR experiments to validate our results. This study provides molecular insights into the mechanisms by which low-acidity traits form in apples and offers a theoretical basis for regulating the flavor of fleshy fruits.…”
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Comparative Analysis of Floral Transcriptomes in <i>Gossypium hirsutum</i> (Malvaceae) by Alexander Nobles, Jonathan F. Wendel, Mi-Jeong Yoo

“…Organ-specific transcriptomes provide valuable insight into the genes involved in organ identity and developmental control. …”
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Transcriptomic Profile of Tef (<i>Eragrostis tef</i>) in Response to Drought by Lorena Ramirez-Gonzales, Gina Cannarozzi, Abiel Rindisbacher, Lea Jäggi, Regula Schneider, Annett Weichert, Sonia Plaza-Wüthrich, Solomon Chanyalew, Kebebew Assefa, Zerihun Tadele

“…While the grain of tef provides quality food for humans, its straw is the most palatable and nutritious feed for livestock. …”
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Transcriptome analysis of Ipomoea cairica algicidal mechanism against Phaeocystis globosa by Dayong Liang, Huanxin Li, Yuxuan Pan, Zihan Liu, Hua Xiang

“…This study highlights the mechanism of the toxic effect of I. cairica extracts on P. globosa and provides a theoretical basis for the development of an algaecide targeting P. globosa.…”
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Flexible analysis of spatial transcriptomics data (FAST): a deconvolution approach by Meng Zhang, Joel Parker, Lingling An, Yiwen Liu, Xiaoxiao Sun

“…As a result of technical limitations, the majority of spatial transcriptomics techniques provide bulk data for each sequencing spot. …”
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Single-cell transcriptome profiling of the human endometrium of patients with intrauterine adhesions by Ping Li, Yu Jian, Xinyi Liu, Li Pan, Zhihui Tan, Nianchun Shan

“…According to the number of intercellular receptor–ligand pairs, we identified endothelial cells as the core cell population. Our study provides deeper insights into the endometrial microenvironment disorders that are potentially applicable to improving therapeutics for IUAs.…”
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Identification of the Genomics and Transcriptomics Regulators of the DNA Damage Response in Breast Cancer by Mehdi Sadeghi, Mohammad Reza Karimi, Amir Hossein Karimi

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Integrated Metabolomic and Transcriptomic Analysis Revealed the Mechanism of BHPF Exposure in Endometrium by Xin Tan, Nengyong Ouyang, Wenjun Wang, Junting Qiu

“…Our study highlights that the health risk of BHPF exposure to endometrial epithelial cells is concentration-dependent and that integrated analysis of metabolomic and transcriptomic data not only revealed the biological effects of BHPF and its underlying mechanisms, but also provided key candidate target genes for further exploration.…”
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