Integrated metabolomic and transcriptomic analysis of anthocyanin metabolism in wheat pericarp by Jiao Wang, Lei Sun, Bo Jiao, Pu Zhao, Tianyun Xu, Sa Gu, Chenmin Huo, Jianzhou Pang, Shuo Zhou

“…In this study, a transcriptomic and metabolomic analysis between white and purple color wheat pericarp aimed to explore some key genes and metabolites involved in anthocyanin metabolism. …”
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The design of experiments for the transcriptome studies by high-throughput sequencing methods by P. N. Menshanov, N. N. Dygalo

“…Additional sequencing does not provide any substantial additional information about the transcriptome complexity. …”
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Single-cell transcriptome reveals potential mechanisms for gout in children by Shengyou Yu, Ren Qi, Liang Xiao, YiHui Huang, Li Yu

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Transcriptomic Profiling of Fruit Development in Black Raspberry Rubus coreanus by Qing Chen, Xunju Liu, Yueyang Hu, Bo Sun, Yaodong Hu, Xiaorong Wang, Haoru Tang, Yan Wang

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Single-Cell Transcriptomics in Spinal Cord Studies: Progress and Perspectives by Maiweilan Maihemuti, Mst. Afsana Mimi, S. M. Sohag, Md. Mahmudul Hasan

“…In spinal cord research, scRNA-seq provides critical insights into cell type diversity, developmental trajectories, and pathological mechanisms. …”
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A high-resolution anatomical atlas of the transcriptome in the mouse embryo. by Graciana Diez-Roux, Sandro Banfi, Marc Sultan, Lars Geffers, Santosh Anand, David Rozado, Alon Magen, Elena Canidio, Massimiliano Pagani, Ivana Peluso, Nathalie Lin-Marq, Muriel Koch, Marchesa Bilio, Immacolata Cantiello, Roberta Verde, Cristian De Masi, Salvatore A Bianchi, Juliette Cicchini, Elodie Perroud, Shprese Mehmeti, Emilie Dagand, Sabine Schrinner, Asja Nürnberger, Katja Schmidt, Katja Metz, Christina Zwingmann, Norbert Brieske, Cindy Springer, Ana Martinez Hernandez, Sarah Herzog, Frauke Grabbe, Cornelia Sieverding, Barbara Fischer, Kathrin Schrader, Maren Brockmeyer, Sarah Dettmer, Christin Helbig, Violaine Alunni, Marie-Annick Battaini, Carole Mura, Charlotte N Henrichsen, Raquel Garcia-Lopez, Diego Echevarria, Eduardo Puelles, Elena Garcia-Calero, Stefan Kruse, Markus Uhr, Christine Kauck, Guangjie Feng, Nestor Milyaev, Chuang Kee Ong, Lalit Kumar, MeiSze Lam, Colin A Semple, Attila Gyenesei, Stefan Mundlos, Uwe Radelof, Hans Lehrach, Paolo Sarmientos, Alexandre Reymond, Duncan R Davidson, Pascal Dollé, Stylianos E Antonarakis, Marie-Laure Yaspo, Salvador Martinez, Salvador Martinez, Richard A Baldock, Gregor Eichele, Andrea Ballabio

“…This information is provided by colorimetric RNA in situ hybridization that can elucidate expression of genes in their native context and does so at cellular resolution. …”
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A single‐cell transcriptomic atlas of severe intrauterine adhesion by Siyu Xia, Wenting Ye, Jiajun Zeng, Ge Song, Yan Sun, Yongmei Zhang, Xiaoqing Luo, Jing Cai, Hongjin Yu, Wenwei Pan, Jiayun Chen, Chuanbin Yang, Qingming Luo, Jigang Wang, Yali Song

“…The insights gained from this study are expected to provide valuable resources for future diagnostic and therapeutic approaches.…”
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Comparative Transcriptome Analysis of Temperature-Induced Green Discoloration in Garlic by Ningyang Li, Zhichang Qiu, Xiaoming Lu, Bingchao Shi, Xiudong Sun, Xiaozhen Tang, Xuguang Qiao

“…The identification of large numbers of DEGs provides a basis for further elucidating the mechanism of low-temperature-induced green discoloration in garlic.…”
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Screening biomarkers related to cholesterol metabolism in osteoarthritis based on transcriptomics by ChenDeng Lao, Wei Wei, JianWen Cheng, ShiJie Liao, XiaoLin Luo, Qian Huang, HengZhen Huang, JinMin Zhao

“…This study aimed to investigate the role of CMRGs in OA and provide new insights into its treatment. In this study, two OA datasets, GSE55457 and GSE55235, were applied, which contained the transcriptome data of 10 OA samples and 10 control samples (synovial tissue) respectively. …”
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Transcriptome analysis reveals regulatory mechanism of postharvest softening in kiwiberry by Zhao Liu, Yang Sun, Zhenpan Liu, Jianyu Song, Weicong Yang, Zhannan Wang, Taiming Liang, Dejun Liang

“…The results of this study thus provide insight into the transcriptional regulatory mechanism of kiwiberry softening during storage to improve the postharvest quality.…”
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Dynamic changes in the skin transcriptome for the melanin pigmentation in embryonic chickens by Dong Leng, Maosen Yang, Xiaomeng Miao, Zhiying Huang, Mengmeng Li, Jia Liu, Tao Wang, Diyan Li, Chungang Feng

“…These analyses illuminated the gene regulatory mechanism and provided foundational data that pertained to pigmentation in chickens.…”
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Transcriptome and proteome profile analysis of the regulation of chicken ovarian development by Xuan Huang, Chunhui Xu, Shibao Li, Yuting Tan, Yunyan Huang, Zhaozheng Yin

“…To better understand this developmental trajectory from early stages to the peak of egg production, this study employed transcriptomic and Tandem Mass Tag (TMT) proteomic analyses. …”
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A spatial transcriptomic atlas of the host response to oropharyngeal candidiasis by Sunna Nabeela, Hayden McSwiggin, Rubens Daniel Miserani Magalhaes, Eliciane Cevolani Mattos, Mohammad Mannan, John T. Dillon, Ashley Barbarino, Eman G. Youssef, Shakti Singh, Wei Yan, Ashraf S. Ibrahim, Heather R. Conti, Priya Uppuluri

“…This approach provided a view of cellular interactions and immune dynamics, revealing intricate crosstalk between distinct immune cell populations. …”
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Hormonal and Transcriptomic Insights into Inflorescence Stalk Elongation in Oil Palm by Peng Shi, Yin Min Htwe, Dapeng Zhang, Zhiying Li, Qun Yu, Xiangman He, Jing Yang, Yong Wang

“…This study aimed to investigate the differences in stalk lengths between male and female inflorescences in Tenera oil palm and to elucidate the underlying hormonal and transcriptomic mechanisms. The stalk lengths from inflorescences associated with the fourth to eighteenth leaf positions of Tenera oil palm trees were measured, and hormone profiling and RNA sequencing (RNA-seq) were conducted in immature (F4 and M5) and mature (F14 and M13) stalks from an individual tree. …”
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Single cell transcriptomic analysis reveals transcriptome differences of different cells between eosinophilic chronic rhinosinusitis with nasal polyps and non-eosinophilic chronic... by Ying Jin, Yuanshan Liang, Zhijun Wang, Yiting Jiang, Fayang Yuan, Tian Zhang

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The lamprey habenula provides an extreme example for the temporal regulation of asymmetric development by Lucile Guichard, Ronan Lagadec, Léo Michel, Hélène Mayeur, Michaël Fuentès, Jordan Pain, Noah Heier, Quentin Rougemont, Maria Celina Rodicio, Antón Barreiro-Iglesias, Antón Barreiro-Iglesias, Patrick Blader, Michael Schubert, Sylvie Mazan

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Metabolomic and transcriptomic insights into the mechanisms of renal ischemia-reperfusion injury progression by Wanyi Li, Xiaoqing Liu, Honglin Li, Jiawei Zeng, Yan Chen, Bei Xu

“…This study aims toinvestigate the potential mechanisms in the progression of IRI-AKI by integrating metabolomics and transcriptomics data, providing a reference for the subsequent identification of biomarkers and therapeutic targets. …”
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Multiparity induces persistent myocardial structural, functional and transcriptomic remodelling in mice by Ruth R. Magaye, Bing H. Wang, Hongyi R. Liu, Shanae Bailey, Rithy Nuon, Sabrina Sutano, Michael Nyugen, Helen Kiriazis, Kyah Grigolon, Luchen Shan, William W. H. Ho, Fumihiko Takeuchi, Daniel G. Donner, David M. Kaye

“…Cardiac function was assessed by echocardiography together with transcriptomic analysis of the left ventricular myocardium. …”
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A Guide to Basic RNA Sequencing Data Processing and Transcriptomic Analysis by Rowayna Shouib, Gary Eitzen, Rineke Steenbergen

“…RNA sequencing (RNA-Seq) has transformed transcriptomic research, enabling researchers to perform large-scale inspection of mRNA levels in living cells. …”
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A practical guide for single-cell transcriptome data analysis in neuroscience by Yoshinori Hayakawa, Haruka Ozaki

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