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    Electrodiffusion dynamics in the cardiomyocyte dyad at nano-scale resolution using the Poisson-Nernst-Planck (PNP) equations. by Karoline Horgmo Jæ Ger, Aslak Tveito

    Published 2025-06-01
    “…Here, we present a nano-scale computational model, representing dyad dynamics using the PNP system. …”
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    Simulated synapse loss induces depression-like behaviors in deep reinforcement learning by Eric Chalmers, Santina Duarte, Xena Al-Hejji, Daniel Devoe, Aaron Gruber, Robert J. McDonald

    Published 2024-11-01
    “…These results support a conceptual model of MDD as a reduction of brain connectivity (and thus information-processing capacity) rather than an imbalance in monoamines—though the computational model suggests a possible explanation for the dysfunction of dopamine systems in MDD. …”
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    Limits on reliable information flows through stochastic populations. by Lucas Boczkowski, Emanuele Natale, Ofer Feinerman, Amos Korman

    Published 2018-06-01
    “…Biological systems can share and collectively process information to yield emergent effects, despite inherent noise in communication. …”
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    Task-dependent changes in cross-level coupling between single neurons and oscillatory activity in multiscale networks. by Ryan T Canolty, Karunesh Ganguly, Jose M Carmena

    Published 2012-01-01
    “…While a complete mechanistic account of this process remains elusive, evidence suggests that neuronal oscillations may play a key role in this process, with different rhythms influencing both local computation and long-range communication. …”
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  19. 9439

    miRAW: A deep learning-based approach to predict microRNA targets by analyzing whole microRNA transcripts. by Albert Pla, Xiangfu Zhong, Simon Rayner

    Published 2018-07-01
    “…MicroRNAs (miRNAs) are small non-coding RNAs that regulate gene expression by binding to partially complementary regions within the 3'UTR of their target genes. Computational methods play an important role in target prediction and assume that the miRNA "seed region" (nt 2 to 8) is required for functional targeting, but typically only identify ∼80% of known bindings. …”
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