Electron transfer interactome of cytochrome C. by Alexander N Volkov, Nico A J van Nuland

“…Lying at the heart of many vital cellular processes such as photosynthesis and respiration, biological electron transfer (ET) is mediated by transient interactions among proteins that recognize multiple binding partners. …”
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Cooperativity dominates the genomic organization of p53-response elements: a mechanistic view. by Yongping Pan, Ruth Nussinov

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Shaping embodied neural networks for adaptive goal-directed behavior. by Zenas C Chao, Douglas J Bakkum, Steve M Potter

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Integrating artificial intelligence in higher education: perceptions, challenges, and strategies for academic innovation by Dusana Alshatti Schmidt, Bedour Alboloushi, Anisha Thomas, Rodrigo Magalhaes

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A PRELIMINARY STRATEGY TOWARDS SUPPORTING THE AUTOMATION OF SHARIAH-COMPLIANT REQUIREMENTS by Normi Sham Awang Abu Bakar, Azlin Nordin, Madihah Sheikh Abdul Aziz, Norzariyah Yahya, Aminudin Che Ahmad, Mohd Khairul Azmi Hassan

The cognitive impacts of large language model interactions on problem solving and decision making using EEG analysis by Ting Jiang, Jihua Wu, Stephen C. H. Leung

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Whole-cell modeling of E. coli colonies enables quantification of single-cell heterogeneity in antibiotic responses. by Christopher J Skalnik, Sean Y Cheah, Mica Y Yang, Mattheus B Wolff, Ryan K Spangler, Lee Talman, Jerry H Morrison, Shayn M Peirce, Eran Agmon, Markus W Covert

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Expectation generation and its effect on subsequent pain and visual perception. by Rotem Botvinik-Nezer, Stephan Geuter, Martin A Lindquist, Tor D Wager

“…Region of interest analyses showed activity consistent with aversive prediction-error-like encoding in the periaqueductal gray during pain perception, but no cue or prediction error-related responses in early perceptual processing systems. Furthermore, behavioral and computational models of the expectation session revealed that expectations construction was biased towards extreme cue values in both modalities, and towards low-pain cues specifically. …”
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Identification of new IκBα complexes by an iterative experimental and mathematical modeling approach. by Fabian Konrath, Johannes Witt, Thomas Sauter, Dagmar Kulms

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Capturing Global Structural Features and Global Temporal Dependencies in Dynamic Social Networks Using Graph Convolutional Networks for Enhanced Analysis by Ling Wu, Boen Li, Kun Guo, Qishan Zhang

“…Specifically, we innovatively design a graph coarsening strategy based on the importance of social membership to construct a dynamic diffusion process of graphs. This dynamic diffusion process can be viewed as using higher-order subgraph embeddings to guide the generation of lower-order subgraph embeddings, and we model this process using gate recurrent unit (GRU) to extract comprehensive global structural features of the graph and the evolutionary processes embedded among subgraphs. …”
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Neural oscillation in low-rank SNNs: bridging network dynamics and cognitive function by Bin Li, Tianyi Zheng, Reo Otsuki, Masato Sugino, Kenta Shimba, Kiyoshi Kotani

“…Neural oscillation, particularly gamma oscillation, are fundamental to cognitive processes such as attention, perception, and decision-making. …”
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Capturing the emergent dynamical structure in biophysical neural models. by Borjan Milinkovic, Lionel Barnett, Olivia Carter, Anil K Seth, Thomas Andrillon

“…This work also provides a complete computational implementation for the identification of emergent neural dynamics that could be applied both in silico and in vivo.…”
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Multiscale modeling of metal-hydride interphases—quantification of decoupled chemo-mechanical energies by Ebert Alvares, Kai Sellschopp, Bo Wang, ShinYoung Kang, Thomas Klassen, Brandon C. Wood, Tae Wook Heo, Paul Jerabek, Claudio Pistidda

“…Abstract The quantification of interphase properties between metals and their corresponding hydrides is crucial for modeling the thermodynamics and kinetics of the hydrogenation processes in solid-state hydrogen storage materials. …”
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A dynamic model of interactions of Ca2+, calmodulin, and catalytic subunits of Ca2+/calmodulin-dependent protein kinase II. by Shirley Pepke, Tamara Kinzer-Ursem, Stefan Mihalas, Mary B Kennedy

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Asymmetric and transient properties of reciprocal activity of antagonists during the paw-shake response in the cat. by Jessica R Parker, Alexander N Klishko, Boris I Prilutsky, Gennady S Cymbalyuk

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The role of the Hes1 crosstalk hub in Notch-Wnt interactions of the intestinal crypt. by Sophie K Kay, Heather A Harrington, Sarah Shepherd, Keith Brennan, Trevor Dale, James M Osborne, David J Gavaghan, Helen M Byrne

“…Here, we propose a new mathematical model of the Notch and Wnt pathways, in which the Hes1 promoter acts as a hub for pathway crosstalk. Computational simulations of the model can assist in understanding how healthy intestinal tissue is maintained, and predict the likely consequences of biochemical knockouts upon cell fate selection processes. …”
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A genome-scale metabolic model for the denitrifying bacterium Thauera sp. MZ1T accurately predicts degradation of pollutants and production of polymers. by Diego Tec-Campos, Juan D Tibocha-Bonilla, Celina Jiang, Anurag Passi, Deepan Thiruppathy, Cristal Zuñiga, Camila Posadas, Alejandro Zepeda, Karsten Zengler

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An integrative genomic approach to uncover molecular mechanisms of prokaryotic traits. by Yang Liu, Jianrong Li, Lee Sam, Chern-Sing Goh, Mark Gerstein, Yves A Lussier

“…Here, we developed a high throughput computational approach, and demonstrated for the first time the feasibility of integrating large quantities of prokaryotic phenotypes along with genomic datasets for mining across multiple scales of biology (protein domains, pathways, molecular functions, and cellular processes). …”
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Operational response simulation tool for epidemics within refugee and IDP settlements: A scenario-based case study of the Cox's Bazar settlement. by Joseph Aylett-Bullock, Carolina Cuesta-Lazaro, Arnau Quera-Bofarull, Anjali Katta, Katherine Hoffmann Pham, Benjamin Hoover, Hendrik Strobelt, Rebeca Moreno Jimenez, Aidan Sedgewick, Egmond Samir Evers, David Kennedy, Sandra Harlass, Allen Gidraf Kahindo Maina, Ahmad Hussien, Miguel Luengo-Oroz

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Efficient lightweight cryptographic solutions for enhancing data security in healthcare systems based on IoT by Abdul Muhammed Rasheed, Retnaswami Mathusoothana Satheesh Kumar

“…The growing integration of the Internet of Things (IoT) within healthcare systems has notably enhanced patient monitoring and data collection processes. Nonetheless, IoT devices exhibit significant susceptibility to cyber threats, primarily attributed to their constrained computational capabilities and their exposure to network-based attacks. …”
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