Optimizing the learning rate for adaptive estimation of neural encoding models. by Han-Lin Hsieh, Maryam M Shanechi

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Redox poise in R. rubrum phototrophic growth drives large-scale changes in macromolecular pathways. by William R Cannon, Ethan King, Katherine A Huening, Justin A North

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The Modular Organization of Protein Interactions in Escherichia coli. by José M Peregrín-Alvarez, Xuejian Xiong, Chong Su, John Parkinson

“…Escherichia coli serves as an excellent model for the study of fundamental cellular processes such as metabolism, signalling and gene expression. …”
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nf-core/airrflow: An adaptive immune receptor repertoire analysis workflow employing the Immcantation framework. by Gisela Gabernet, Susanna Marquez, Robert Bjornson, Alexander Peltzer, Hailong Meng, Edel Aron, Noah Y Lee, Cole G Jensen, David Ladd, Mark Polster, Friederike Hanssen, Simon Heumos, nf-core community, Gur Yaari, Markus C Kowarik, Sven Nahnsen, Steven H Kleinstein

“…However, currently available tools offer limited parallelization across samples, scalability or portability to high-performance computing infrastructures. To address this need, we developed nf-core/airrflow, an end-to-end bulk and single-cell AIRR-seq processing workflow which integrates the Immcantation Framework following BCR and TCR sequencing data analysis best practices. …”
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Affinity Coefficient for Clustering Autoregressive Moving Average Models by Ana Paula Nascimento, Alexandra Oliveira, Brígida Mónica Faria, Rui Pimenta, Mónica Vieira, Cristina Prudêncio, Helena Bacelar-Nicolau

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Performance Analysis of a DEKF for Available Bandwidth Measurement by Diego Santoro, Michele Vadursi

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The Information Philosophy Implication of Yin-Yang by Huimin Zhang

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Viral phylodynamics. by Erik M Volz, Katia Koelle, Trevor Bedford

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Metabolic network segmentation: A probabilistic graphical modeling approach to identify the sites and sequential order of metabolic regulation from non-targeted metabolomics data. by Andreas Kuehne, Urs Mayr, Daniel C Sévin, Manfred Claassen, Nicola Zamboni

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The (in)dependence of alternative splicing and gene duplication. by David Talavera, Christine Vogel, Modesto Orozco, Sarah A Teichmann, Xavier de la Cruz

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Design of intelligent English translation teaching system combined with bidirectional encoder representation by Shanshan Xu

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Increased Curie temperature in lithium substituted ferroelectric niobate perovskite via soft polar mode enhancement by Hao-Cheng Thong, Fang-Zhou Yao, Xian-Xian Cai, Ze Xu, Mao-Hua Zhang, Huazhang Zhang, Ben Xu, Yan Wei, Shi-Dong Wang, Ke Wang

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Dynamics of trimming the content of face representations for categorization in the brain. by Nicola J van Rijsbergen, Philippe G Schyns

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Evaluation method of e-government audit information based on big data analysis by Jingui He, Hansi Ya

“…The proposed method is built on a Hadoop-based distributed computing platform, which supports heterogeneous data integration and efficient parallel processing. …”
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First-principles Hubbard parameters with automated and reproducible workflows by Lorenzo Bastonero, Cristiano Malica, Eric Macke, Marnik Bercx, Sebastiaan Huber, Iurii Timrov, Nicola Marzari

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On the sampling sparsity of analog-to-spike conversion based on leaky integrate-and-fire by Bernhard A Moser, Michael Lunglmayr

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Synthetic population generation with public health characteristics for spatial agent-based models. by Emma Von Hoene, Amira Roess, Hamdi Kavak, Taylor Anderson

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Optical Neuroimage Studio (OptiNiSt): Intuitive, scalable, extendable framework for optical neuroimage data analysis. by Yukako Yamane, Yuzhe Li, Keita Matsumoto, Ryota Kanai, Miles Desforges, Carlos Enrique Gutierrez, Kenji Doya

“…OptiNiSt includes the following features. 1) Researchers can easily create analysis pipelines by selecting multiple processing modules, tuning their parameters, and visualizing the results at each step through a graphic user interface in a web browser. 2) In addition to pre-installed tools, new analysis algorithms can be easily added. 3) Once a processing pipeline is designed, the entire workflow with its modules and parameters are stored in a YAML file, which makes the pipeline reproducible and deployable on high-performance computing clusters. 4) OptiNiSt can read image data in a variety of file formats and store the analysis results in NWB (Neurodata Without Borders), a standard data format for data sharing. …”
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Surgical hyperspectral imaging: a systematic review by Hafsa Moontari Ali, Yiming Xiao, Marta Kersten-Oertel

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Boltzmann energy-based image analysis demonstrates that extracellular domain size differences explain protein segregation at immune synapses. by Nigel J Burroughs, Karsten Köhler, Vladimir Miloserdov, Michael L Dustin, P Anton van der Merwe, Daniel M Davis

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