Comment on: Toward an optimal contraception dosing strategy. by Giuseppe Benagiano, Andrea R Genazzani, Giovanni Grandi, Sun-Wei Guo, Marwan Habiba

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Accelerating phase field simulations through a hybrid adaptive Fourier neural operator with U-net backbone by Christophe Bonneville, Nathan Bieberdorf, Arun Hegde, Mark Asta, Habib N. Najm, Laurent Capolungo, Cosmin Safta

“…Abstract Prolonged contact between a corrosive liquid and metal alloys can cause progressive dealloying. For one such process as liquid-metal dealloying (LMD), phase field models have been developed to understand the mechanisms leading to complex morphologies. …”
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Innovative application of particle swarm algorithm in the improvement of digital enterprise management efficiency by Shengnan Zhang

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A versatile workflow to integrate RNA-seq genomic and transcriptomic data into mechanistic models of signaling pathways. by Martín Garrido-Rodriguez, Daniel Lopez-Lopez, Francisco M Ortuno, María Peña-Chilet, Eduardo Muñoz, Marco A Calzado, Joaquin Dopazo

“…MIGNON covers the whole process, from reads to signaling circuit activity estimations, using state-of-the-art tools, it is easy to use and it is deployable in different computational environments, allowing an optimized use of the resources available.…”
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A machine-learning framework for accelerating spin-lattice relaxation simulations by Valerio Briganti, Alessandro Lunghi

“…Ab initio simulations have played a fundamental role in shaping our understanding of this process but further progress is hindered by their high computational cost. …”
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Excitatory local interneurons enhance tuning of sensory information. by Collins Assisi, Mark Stopfer, Maxim Bazhenov

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Neural network approaches, including use of topological data analysis, enhance classification of human induced pluripotent stem cell colonies by treatment condition. by Alexander Ruys de Perez, Paul E Anderson, Elena S Dimitrova, Melissa L Kemp

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Chapter 2: Data-driven view of disease biology. by Casey S Greene, Olga G Troyanskaya

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A multiscale electro-metabolic model of a rat neocortical circuit reveals the impact of ageing on central cortical layers. by Sofia Farina, Alessandro Cattabiani, Darshan Mandge, Polina Shichkova, James B Isbister, Jean Jacquemier, James G King, Henry Markram, Daniel Keller

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Regulation of replication timing in Saccharomyces cerevisiae. by Rosie Berners-Lee, Eamonn Gilmore, Francisco Berkemeier, Michael A Boemo

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Variance in C. elegans gut bacterial load suggests complex host-microbe dynamics. by Satya Spandana Boddu, K Michael Martini, Ilya Nemenman, Nic M Vega

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Molecular evolution of peptide ligands with custom-tailored characteristics for targeting of glycostructures. by Niels Röckendorf, Markus Borschbach, Andreas Frey

“…The influence of different evolutional parameters and mechanisms such as mutation rate, crossover probability, gaussian variation and fitness value scaling on the course of this artificial evolutional process was investigated. As a proof of concept peptidic ligands for a model target molecule, the cell surface glycolipid ganglioside G(M1), were identified. …”
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Learning as filtering: Implications for spike-based plasticity. by Jannes Jegminat, Simone Carlo Surace, Jean-Pascal Pfister

“…Most normative models in computational neuroscience describe the task of learning as the optimisation of a cost function with respect to a set of parameters. …”
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Simulating magnetic transition states via string method in first principle calculation by Wenlong Tang, Yanbo Li, Ben Xu

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A neurocomputational model of the mismatch negativity. by Falk Lieder, Klaas E Stephan, Jean Daunizeau, Marta I Garrido, Karl J Friston

“…This work advances a formal understanding of the MMN and--more generally--illustrates the potential for developing computationally informed dynamic causal models of empirical electromagnetic responses.…”
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novoStoic2.0: An integrated framework for pathway synthesis, thermodynamic evaluation, and enzyme selection. by Vikas Upadhyay, Mohit Anand, Costas D Maranas

“…In summary, novoStoic2.0 aims to streamline the process of pathway design contributing to the development of sustainable biotechnological solutions.…”
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Optimization hardness constrains ecological transients. by William Gilpin

“…Here, we use tools from computational complexity theory to frame equilibration in complex ecosystems as the process of solving an analogue optimization problem. …”
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Modelling reveals kinetic advantages of co-transcriptional splicing. by Stuart Aitken, Ross D Alexander, Jean D Beggs

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Modelling locust foraging: How and why food affects group formation. by Fillipe Georgiou, Camille Buhl, J E F Green, Bishnu Lamichhane, Ngamta Thamwattana

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Genetic Algorithm-Based Method for Discovering Involutory MDS Matrices by El Mehdi Bellfkih, Said Nouh, Imrane Chems Eddine Idrissi, Khalid Louartiti, Jamal Mouline

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