Mitochondrial genome of Lonicera macranthoides: features, RNA editing, and insights into male sterility by Zhong Chen, Wei Zhuo, Yuqi Wang, Junpeng Qi, Li Liu, Sheng’E. Lu, Han Wang, Tao Sun, Liqiang Wang, Fengming Ren, Fengming Ren

“…RNA editing events were identified by integrating the mitogenome data with RNA sequencing data from leaf, stem, and flower tissues. …”
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The UFMylation pathway is impaired in Alzheimer’s disease by Tingxiang Yan, Michael G. Heckman, Emily C. Craver, Chia-Chen Liu, Bailey D. Rawlinson, Xue Wang, Melissa E. Murray, Dennis W. Dickson, Nilufer Ertekin-Taner, Zhenkun Lou, Guojun Bu, Wolfdieter Springer, Fabienne C. Fiesel

“…We further studied associations of the UFMylation cascade with cellular stress pathways using Spearman correlations with bulk RNAseq expression data and functionally validated these interactions using gene-edited neurons that were generated by CRISPR-Cas9. …”
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Enhancer profiling uncovers Jmjd1c as an essential suppressor in neuropathic pain by targeting Socs3 by Le Zhang, Yan Xie, Shun Wang, Moxuan Gong, Zheping Chen, Chuanxin Wang, Peilong Li

“…We first established a NP model in rats, and subsequently performed H3K27ac ChIP-Seq and RNA-Seq on their spinal cord tissues to analyze the active enhancers. By integrated analysis of ChIP-seq data and RNA-seq data, we clarified a series of SE-associated genes involved in NP progression. qPCR and double immunofluorescence staining results suggested that Jmjd1c mRNA and protein levels were significantly down-regulated in the NP model. …”
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Clinical Predictive Factors for Reproductive Organ Involvement in Females with Muscle Invasive Bladder Cancer: A Retrospective Review of Radical Cystectomy Cases from Two Tertiary... by Nastaran Mahmoudnejad, Mohammad Hamidi Madani, Parham Montazeri, Kimia Vakili, Mohammad Nasri, Sajjad Imen, Navid Masoumi

“…Background: The preservation of reproductive organs in females with muscle-invasive bladder cancer (MIBC) might improve reproductive and sexual function. This study aimed to identify potential clinical risk factors for reproductive organ involvement (ROI) using preoperative data from transurethral resection of tumor (TURT) reports and imaging findings. …”
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STIL Overexpression Is Associated with Chromosomal Numerical Abnormalities in Non-Small-Cell Lung Carcinoma Through Centrosome Amplification by Shunsuke Ohtsuka, Hisami Kato, Rei Ishikawa, Hirofumi Watanabe, Ryosuke Miyazaki, Shin-ya Katsuragi, Katsuhiro Yoshimura, Hidetaka Yamada, Yasuhiro Sakai, Yusuke Inoue, Yusuke Takanashi, Keigo Sekihara, Kazuhito Funai, Haruhiko Sugimura, Kazuya Shinmura

“…To elucidate the functional role of STIL, an inducible STIL-overexpressing H1299 NSCLC cell line was generated. …”
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Order–Disorder-Type Transitions Through a Multifractal Procedure in Cu-Zn-Al Alloys—Experimental and Theoretical Design by Constantin Plăcintă, Valentin Nedeff, Mirela Panainte-Lehăduş, Elena Puiu Costescu, Tudor-Cristian Petrescu, Sergiu Stanciu, Maricel Agop, Diana-Carmen Mirilă, Florin Nedeff

“…Then, through self-modulations of the thermal field, the Cu-Zn-Al alloy will self-structure in channel-type or cellular-type thermal patterns, which can be linked to obtained experimental data. Consequently, since the thermal conductivity becomes a function of the observation scale, and heat transfer is modified to reflect the multifractal, non-differentiable paths in the material, it leads to anomalous diffusion and complex thermal behaviors.…”
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Deciphering the role of metal ion transport-related genes in T2D pathogenesis and immune cell infiltration via scRNA-seq and machine learning by Zuhui Pu, Zuhui Pu, Tony Bowei Wang, Ying Lu, Ying Lu, Zijing Wu, Zijing Wu, Yuxian Chen, Ziqi Luo, Xinyu Wang, Lisha Mou, Lisha Mou

“…Twelve protein structures were predicted using AlphaFold 3, revealing potential functional conformations. We observed a strong correlation between hub RMITRGs and immune cells, and PPI network analysis revealed key interactions. …”
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Modeling growth curve parameters in Peruvian llamas using a Bayesian approach by Ali William Canaza-Cayo, Rubén Herberht Mamani-Cato, Roxana Churata-Huacani, Francisco Halley Rodríguez-Huanca, Maribel Calsin-Cari, Ferdynand Marcos Huacani-Pacori, Oscar Efrain Cardenas Minaya, Júlio Sílvio de Sousa Bueno Filho

“…The MCMC method using the Metropolis-Hastings algorithm with noninformative prior distributions was applied in the Bayesian approach. All non-linear functions closely fitted actual body weight measurements, while the Brody function provided the best fit in both frequentist and Bayesian approaches in describing the growth data of llamas. …”
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SCUP-HPC: System for Constructing and Utilizing Provenance on High-Performance Computing Systems by Yuta Namiki, Takeo Hosomi, Hideyuki Tanushi, Akihiro Yamashita, Susumu Date

“…In computing systems, provenance typically describes a suite of data relationships between simulation and analysis results, programs that generate results, and the input data fed to the programs. …”
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SOME ASPECTS OF THE EATIOLOGY OF PARODONTUS DISEASES. (LITERATURE REVIEW) by N.N. Saveleva, I.I. Sokolova, S.I. German, T.V. Tomilina

“…The article presents the data obtained in the course of studying the literature on the role of disorders in the functioning of individual organs (gastrointestinal tract, liver, lungs, heart, and urinary system) in the development of chronic periodontal diseases. …”
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The crucial role of neutrophil extracellular traps and IL-17 signaling in indomethacin-induced gastric injury in mice by Yujun Hou, Wen Wang, Jiangnan Ye, Luqiang Sun, Siyuan Zhou, Qianhua Zheng, Yunzhou Shi, Ying Chen, Junpeng Yao, Lu Wang, Xiangyun Yan, Renhong Wan, Shuai Chen, Ying Li

“…GO functional annotations and KEGG pathway enrichment analysis were conducted on significant differential proteins. …”
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Patient Reported Outcomes from an Open Label, Multi-Center, Retrospective Study of a Biodegradable Graft for Soft Tissue Reconstruction in Patients Suffering from Chronic Lateral A... by Bryan G. Vopat MD, Ryan Scott DPM

“…These results represent an interim data analysis of an ongoing clinical study. A total of 47 patients diagnosed with chronic lateral ankle instability that had failed conservative therapy, and required surgical intervention to repair the lateral ligament complex were enrolled across two different research centers. …”
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Evaluating the Effectiveness of an Intelligent mHealth Intervention for Child Unintentional Injury Prevention: Protocol for a Cluster Randomized Controlled Trial by Yang Yuan, Yuying Jing, Jiyu Li, Jieyi He, David C Schwebel, Peishan Ning, Zhenzhen Rao, Li Li, Guoqing Hu

“…Secondary outcomes include children’s injury risk level and caregiver supervision behaviors assessed using a standard questionnaire. Data analysis will be conducted using generalized linear mixed models with a Poisson link function and generalized estimating equations to assess the effectiveness of the iCURE intervention, following intention-to-treat principles. …”
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Variabilidade interanual da profundidade óptica da atmosfera sobre Maceió, AL Interannual variability of the optical depth of the atmosphere on Maceió, Alagoas by Edivania de A. Lima, Luis C. B. Molion, Manoel F. Gomes Filho, Janne L. da N. Firmino, Alcides O. da Silva

“…A study of the variability of the optical depth of the atmosphere over Maceió, in the State of Alagoas, using incoming solar radiation in the top of the atmosphere and surface, was carried through long wave radiation (ROL), cloud covering, precipitable water and precipitation using the NCAR/NCEP re-analysis data set. The annual cycle of the optical depth obtained with these data, was compared through observed global radiation from the UFAL meteorology department's data set for the period from 1997 to 1999. …”
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The proximal hamstring avulsion clinical trial (PHACT)—a randomised controlled non-inferiority trial of operative versus non-operative treatment of proximal hamstrings avulsions: s... by Ville M Mattila, Olof Sköldenberg, Martin Eklund, Elsa Pihl, Carl Johan Hedbeck, Målfrid Holen Kristoffersen, Anne-Mari Rosenlund, Sofia Laszlo, Mida Berglöf, Eva Ribom, Karl Eriksson, Frede Frihagen, Jörg Schilcher, Greta Snellman, Mikael Skorpil, Kenneth Jonsson

“…Data analysis will be blinded and intention-to-treat analysis will be preformed.Ethics and dissemination Ethical approval has been granted by the Ethical Committee of Uppsala University (DNR: 2017–170) and by the Norwegian ethical board (REC: 2017/1911). …”
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Evaluation of wastewater percent positive for assessing epidemic trends - A case study of COVID-19 in Shangrao, China by Jing Wang, Haifeng Zhou, Wentao Song, Lingzhen Xu, Yaoying Zheng, Chen You, Xiangyou Zhang, Yeshan Peng, Xiaolan Wang, Tianmu Chen

“…Wastewater samples were obtained through grabbing and laboratory testing was completed within 24 h. The data were then normalized using Z-score normalization and analyzed for lag time and correlation using the xcorr function and Spearman correlation coefficient. …”
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PCBP2 promotes immune evasion via cGAS-STING pathway in biochemical recurrence of prostate cancer by Zeng Zhou, Tiewen Li, Yichen Zhang, Xuehao Zhou, Xiaodong Song, Shiyu Ji, Yishu Huang, Yu Zhang, Yuan Ruan

“…The scRNA-seq data analysis revealed higher immune evasion scores in tumor cells compared to normal cells. …”
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Construction of mitochondrial signature (MS) for the prognosis of ovarian cancer by Miao Ao, You Wu, Kunyu Wang, Haixia Luo, Wei Mao, Anqi Zhao, Xiaomeng Su, Yan Song, Bin Li

“…Functional enrichment analysis was performed on this prognostic gene set. …”
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OpenPheno: an open-access, user-friendly, and smartphone-based software platform for instant plant phenotyping by Tianqi Hu, Peng Shen, Yongshuai Zhang, Jiafei Zhang, Xin Li, Chuanzhen Xia, Ping Liu, Hao Lu, Tingting Wu, Zhiguo Han

“…Conclusions By leveraging cloud computing and a widely accessible interface, OpenPheno democratizes plant phenotyping, making advanced tools available to a broader audience, including plant scientists, breeders, and even amateurs. It can function as a role in AI-driven breeding by providing the necessary data for genotype-phenotype analysis, thereby accelerating breeding programs. …”
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Prognostic significance of acute exacerbations and usual interstitial pneumonia in fibrotic interstitial lung disease by Yun Zhang, Zekai Cen, Qunli Ding, Yanan Ying, Chengna Lv, Tingting Wu

“…Baseline clinical information, pulmonary function tests, and chest images were collected and analysed. …”
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