Functional annotation of the animal genomes: An integrated annotation resource for the horse. by Sichong Peng, Anna R Dahlgren, Callum G Donnelly, Erin N Hales, Jessica L Petersen, Rebecca R Bellone, Ted Kalbfleisch, Carrie J Finno

“…However, to fully understand the functional implications of these variants, detailed annotation of the horse genome is required. …”
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Fungal genomes: suffering with functional annotation errors by Tapan Kumar Mohanta, Ahmed Al-Harrasi

“…However, an error-free functional annotation of these genome is essential for the research communities to fully utilize these data in an optimum and efficient manner. …”
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Comprehensive functional annotation of 77 prostate cancer risk loci. by Dennis J Hazelett, Suhn Kyong Rhie, Malaina Gaddis, Chunli Yan, Daniel L Lakeland, Simon G Coetzee, Ellipse/GAME-ON consortium, Practical consortium, Brian E Henderson, Houtan Noushmehr, Wendy Cozen, Zsofia Kote-Jarai, Rosalind A Eeles, Douglas F Easton, Christopher A Haiman, Wange Lu, Peggy J Farnham, Gerhard A Coetzee

“…We provide a comprehensive annotation of the 77 known risk loci, based upon highly correlated variants in biologically relevant chromatin annotations--we identified 727 such potentially functional SNPs. …”
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Annotating protein functions via fusing multiple biological modalities by Wenjian Ma, Xiangpeng Bi, Huasen Jiang, Zhiqiang Wei, Shugang Zhang

“…Besides, we also present biological insights into the associations between those modalities and protein functions. This research provides a robust framework for integrating multimodal biological data, offering a scalable solution for protein function annotation, ultimately facilitating advancements in precision medicine and the discovery of novel therapeutic strategies.…”
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Functional annotation of the Hippo pathway somatic mutations in human cancers by Han Han, Zhen Huang, Congsheng Xu, Gayoung Seo, Jeongmin An, Bing Yang, Yuhan Liu, Tian Lan, Jiachen Yan, Shanshan Ren, Yue Xu, Di Xiao, Jonathan K. Yan, Claire Ahn, Dmitry A. Fishman, Zhipeng Meng, Kun-Liang Guan, Ruxi Qi, Ray Luo, Wenqi Wang

“…Here we analyze the Hippo somatic mutations in the human cancer genome and functionally annotate their roles in targeting the Hippo pathway. …”
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Features of functional annotation of rheumatoid arthritis susceptibility genes by Cytoscape by N. Yu. Chasovskikh

Subjects: “…functional annotation of genes…”
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Improved transcriptome assembly and functional annotation of Pleurodeles waltl for regeneration research. by Mhd Yousuf Yassouf, Akira Kinoshita, Md Mahmudul Hasan, Tao-Sheng Li

“…Furthermore, we significantly improved the functional annotation by using the Trinotate pipeline, which includes the identification of complete ORFs, Pfam motifs, gene names, GO terms, and KEGG Orthology, facilitating more robust transcriptomic analyses. …”
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Chromosomal scale assembly and functional annotation of the apicomplexan parasite Eimeria acervulina by Subodh K. Srivastava, Carolyn C. Parker, Peter C. Thompson, Matthew S. Tucker, Benjamin M. Rosenthal, Asis Khan, Matthew J. Valente, Mark C. Jenkins

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The Browser-Based GLAUx Treebank Infrastructure: Framework, Functionality, and Future by Keersmaekers Alek, Pietowski Frédéric, Van Hal Toon, Depauw Mark

“…Finally, the paper concludes with a discussion of future steps for the project, including additional functionality and expansion of the corpus.…”
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Search for and functional annotation of multi-domain PLA2 family proteins in flatworms by M. E. Bocharnikova, I. I. Turnaev, D. A. Afonnikov

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Improved enzyme functional annotation prediction using contrastive learning with structural inference by Yuxin Yang, Abby Jerger, Song Feng, Zixu Wang, Christina Brasfield, Margaret S. Cheung, Jeremy Zucker, Qiang Guan

“…To address this gap, we propose a Contrastive Learning framework for Enzyme functional ANnotation prediction combined with protein amino acid sequences and Contact maps (CLEAN-Contact). …”
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LCRAnnotationsDB: a database of low complexity regions functional and structural annotations by Joanna Ziemska-Legiecka, Patryk Jarnot, Sylwia Szymańska, Dagmara Błaszczyk, Alicja Staśczak, Hanna Langer-Macioł, Kinga Lucińska, Karolina Widzisz, Aleksandra Janas, Hanna Słowik, Wiktoria Śliwińska, Aleksandra Gruca, Marcin Grynberg

“…These regions play important roles in proteins. However, annotations describing these functions are dispersed across databases and scientific literature. …”
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Integrating comprehensive functional annotations to boost power and accuracy in gene-based association analysis. by Corbin Quick, Xiaoquan Wen, Gonçalo Abecasis, Michael Boehnke, Hyun Min Kang

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Functional annotation and identification of novel drug targets from uncharacterized proteome of Trichuris trichiura by Kanchan Rauthan, Saranya Joshi, Lokesh Kumar, Sudhir Kumar

“…Hence, this study is aimed to provide functional annotations for the uncharacterized proteins identified in the proteome of T. trichiura. …”
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PYROSEQUENCING AND FUNCTIONAL ANNOTATION ANALYSIS OF MICROBIAL COMMUNITY IN FRESH WATER LAKE IN SAUDI ARABIA by SAMY SELIM, NASHWA HAGAGY

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Functional and Structural Annotation of Uncharacterized Lysine Methyltransferase Proteins in <i>Candida auris</i>  by Himanshu Kishore Prasad

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circGPAcorr: an integrative tool for functional annotation of circular RNAs using expression data by Petr Ryšavý, Alikhan Anuarbekov, Michaela Dostálová Merkerová, Jiří Kléma

Subjects: “…Functional annotation…”
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Functional Annotation of Some Hypothetical Genes in the Schistosoma Parasite Based on Reciprocal Best Structural-hit Relationship by Arezou Askari Rad, Jamal Fayazi, Mohammad Taghi Beigi Nassiri, Alireza Hasani Baferani

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Shotgun Metagenomics Reveals Metabolic Potential and Functional Diversity of Microbial Communities of Chitu and Shala Soda Lakes in Ethiopia by Gessesse Kebede Bekele, Ebrahim M. Abda, Fassil Assefa Tuji, Abu Feyisa Meka, Mesfin Tafesse Gemeda

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Enhancing polygenic scores for cardiometabolic traits through tissue- and cell-type-specific functional annotations by Kristjan Norland, Daniel J. Schaid, Iftikhar J. Kullo

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