NORDIC denoising on VASO data by Lasse Knudsen, Lasse Knudsen, Luca Vizioli, Federico De Martino, Lonike K. Faes, Daniel A. Handwerker, Steen Moeller, Peter A. Bandettini, Peter A. Bandettini, Laurentius Huber

“…However, VASO comes along with another reduction in detection sensitivity. NOise Reduction with DIstribution Corrected (NORDIC) PCA (principal component analysis) is a denoising technique specifically aimed at suppressing thermal noise, which has proven useful for increasing the SNR of high-resolution functional data. …”
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Identification of the putative regulatory regions and candidate genes associated with backfat thickness and intramuscular fat content traits in Xiang pigs by Xia Chen, Yundi Zheng, Fengbin Hu, Xiaoli Liu, Wei Wang, Fenfang Qi, Xi Niu, Shihui Huang, Jiafu Wang, Xueqin Ran

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Oligosaccharide production using β-galactosidase from Lactobacillus bulgaricus and Kluyveromyces lactis in sweetened reconstituted nonfat dry milk by Giselle K.P. Guron, Arland T. Hotchkiss, Jr., Brittany H. Bodnar, Andrew Harron, John A. Renye, Jr., Michael J. McAnulty

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Exploration of the interaction between antimicrobial peptides and gamma radiation for biosensor development. by Fabiane Modenese Garbim, Marcela Rabelo De Lima, Giulianna Santos Pereira, João Nilton Conceição Bandeira, Álvaro José Mendes-Boareto, Fernando Manuel Araújo-Moreira, N.F.G. Serrano

“…The total extract (TE) containing the AMPs was irradiated in a Gamacell 220 irradiator with a Co-60 source at the Radiation Technology Center (CTR) of IPEN, subjected to doses of 0.5, 1.0, 4.0, and 10.0 Gy under controlled conditions. …”
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A Nextflow pipeline for T-cell receptor repertoire reconstruction and analysis from RNA sequencing data by Teresa Rubio, Maria Chernigovskaya, Susanna Marquez, Cristina Marti, Paula Izquierdo-Altarejos, Amparo Urios, Carmina Montoliu, Vicente Felipo, Ana Conesa, Victor Greiff, Sonia Tarazona

“…The provided computational pipeline functions as a resource to facilitate TCR profiling from RNA-seq data boosting immunophenotype analyses of immunological diseases.…”
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Genome-wide identification and expression pattern analysis of NAC family in Taxus yunnanensis and the TyuNAC30 role in paclitaxel production by Jiangtao Fan, Yong Wang, Mengke Dou, Qiuhong Hu, Qing Li, Shengmei Gan, Mingwei Jing, Gang Wang, Xiong Huang

“…Taxus yunnanensis, a well-known medicinal plant, is the natural source of the anticancer diterpene paclitaxel. Despite the biological importance of NAC transcription factors, no comprehensive genome-wide study of the NAC gene family has been conducted in T. yunnanensis. …”
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Fruit quality evaluation of different mulberry varieties by Jie Tian, Haichao Wen, Bingxiang Liu, Xinyuan Tian, Yibo Wu, Jingyan Yang, Bingying Zhang, Hongjiao Li

“…IntroductionThe quality of fruits has long been a key focus for breeders, and the development of scientifically sound and reasonable methods for evaluating fruit quality is of great significance in selecting superior cultivars. The mulberry tree, as a plant resource that serves both medicinal and dietary purposes, contains rich nutritional components and various bioactive compounds. …”
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Genome‐Wide Association Studies Reveal the Genetic Architecture of Ionomic Variation in Grains of Tartary Buckwheat by Zhirong Wang, Yuqi He, Mengyu Zhao, Xiang‐Qian Liu, Hao Lin, Yaliang Shi, Kaixuan Zhang, Guijie Lei, Dili Lai, Tong Liu, Xiaoyang Peng, Jiayue He, Wei Li, Xiangru Wang, Sun‐Hee Woo, Muriel Quinet, Alisdair R. Fernie, Xin‐Yuan Huang, Meiliang Zhou

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Genome-wide identification and characterization of the Brassinazole-resistant gene family and associated responses to osmotic stress in Avena sativa by Shirui Xu, Shirui Xu, Shirui Xu, Zihao Wei, Zihao Wei, Mingchuan Ma, Mingchuan Ma, Mingchuan Ma, Lijun Zhang, Lijun Zhang, Lijun Zhang, Zhang Liu, Zhang Liu, Zhang Liu, Longlong Liu, Longlong Liu, Longlong Liu, Longlong Liu

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Identifying Disinformation on the Extended Impacts of COVID-19: Methodological Investigation Using a Fuzzy Ranking Ensemble of Natural Language Processing Models by Jian-An Chen, Wu-Chun Chung, Che-Lun Hung, Chun-Ying Wu

“…MethodsA comprehensive dataset comprising 566 genuine and 2361 fake samples was curated from reliable open sources and processed using advanced techniques. The dataset was randomly split using the scikit-learn package to facilitate both training and evaluation. …”
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Presenting a multi-objective decision-making model for cost-time trade-off considering the time value of money and solving it using particle swarm optimization by Mohammadreza Shahriari

“…To achieve this, a bi-objective mathematical model is developed to support decision-makers in selecting the optimal schedule for project execution.Methodology: In this study, a bi-objective mathematical model is proposed to balance cost and time, incorporating a nonlinear cost function and the time value of money. …”
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Fatty acid composition and antioxidant capacity of defatted, non-defatted and oils extracts of Quercus ilex fruit from Algeria by Hadjira Guenane, Boulanouar Bakchiche, Ramazan Erenler, Ilyas Yildiz, Omar M. Khalaf, Amal M. Saad, Mosad A. Ghareeb

“…Background The nutritional value and health-promoting properties cause the fruits (acorns) of Quercus ilex to have great potential for use in the food industry as functional ingredients and antioxidants source. Objective In this study, the amount of total phenolic compounds, flavonoids in different extracts (defatted, non-defatted) and composition of fatty acids in the fruits oils of Quercus ilex were investigated. …”
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Cross-species single-cell transcriptomic atlas of retinal photoreceptors reveals molecular signatures underlying color vision adaptation by Zhibin Li, Chengkai Yan, Yubao Lu, Yaqing Shu, Shilin Wu, Xi Cheng, Yuge Wang, Shishi Shen, Hui Yang, Gang Cao, Jianping Ji, Liangming Zhang, Jian Sun, Dongchang Xiao, Shasha Li, Wei Qiu

“…This work provides a valuable resource for understanding the transcriptional and metabolic basis of color vision and guides the selection of model organisms for studying color-vision-related diseases.…”
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Design of the optimal groundwater quality monitoring network using a genetic algorithm based optimization approach by Somaye Janatrostami, Ali Salahi

“…Finally, they are coded by bit value equals to 1 for well that was selected for the network or by bit value equals to 0 for well that was not selected for the network. …”
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Impact of gut microbial diversity on egg production performance in chickens by Liping Wu, Tao Zhang, Zhihua Luo, Huiyuan Xiao, Di Wang, Cailong Wu, Xinyan Fang, Jiawei Li, Jing Zhou, Junjie Miao, Hongli Tan, Yanan Wang, Qing Liu, Jianhua Huang

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Consumers` perception on the use of innovative technologies in creating store atmosphere by Mirela Octavia Sirbu, Andreea Simona Săseanu, Simona Ioana Ghită

“…In this context, the selection made by consumers regarding the stores where to purchase from represents a complex decision-making process, conditioned upon the functional and psychological characteristics, among which store atmosphere plays a special part. …”
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Optimizing extraction of microbial DNA from urine: Advancing urinary microbiome research in bladder cancer by Chuang-Ming Zheng, Ho Won Kang, Seongmin Moon, Young Joon Byun, Won Tae Kim, Yung Hyun Choi, Sung-Kwon Moon, Xuan-Mei Piao, Seok Joong Yun

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Relationship between comb development, immune regulation, growth hormone, testosterone, and growth traits in Tianfu broilers by Kunlong Qi, Felix Kwame Amevor, Zheliang Liu, Juan He, Dan Xu, Chencan Zhai, Yingjie Wang, Liuting Wu, Yan Wang, Gang Shu, Xiaoling Zhao

“…The comb, a secondary sexual characteristic in chickens, plays a crucial role in sexual selection, physiological regulation, and growth performance. …”
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Tumor-specific CD8+ T cells from the bone marrow resist exhaustion and exhibit increased persistence in tumor-bearing hosts as compared with tumor-infiltrating lymphocytes by Ivan Borrello, Amy Thomas, Luca Biavati, Robert Leone, Elizabeth M Zawidzka, Claudio Zanettini, Luigi Marchionni

“…Importantly, in a competitive transfer experiment, BM T cells infiltrated the tumor more efficiently than TILs, displayed a higher polyfunctionality with interleukin-2, interferon-γ, tumor necrosis factor-α production and showed greater persistence compared with TILs.Conclusions T cells from the BM appear superior to TILs as a source of cells for cellular therapy. They possess a memory-enriched phenotype and exhibit improved effector function, greater persistence within a tumor-bearing host, and the capacity for increased tumor infiltration. …”
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Systematic protein–protein interaction mapping for clinically relevant human GPCRs by Kate Sokolina, Saranya Kittanakom, Jamie Snider, Max Kotlyar, Pascal Maurice, Jorge Gandía, Abla Benleulmi‐Chaachoua, Kenjiro Tadagaki, Atsuro Oishi, Victoria Wong, Ramy H Malty, Viktor Deineko, Hiroyuki Aoki, Shahreen Amin, Zhong Yao, Xavier Morató, David Otasek, Hiroyuki Kobayashi, Javier Menendez, Daniel Auerbach, Stephane Angers, Natasa Pržulj, Michel Bouvier, Mohan Babu, Francisco Ciruela, Ralf Jockers, Igor Jurisica, Igor Stagljar

“…Our data represent the first large‐scale interactome mapping for human GPCRs and provide a valuable resource for the analysis of signaling pathways involving this druggable family of integral membrane proteins.…”
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