Silver coated porous silicon microarray SERS platform for detecting aflatoxin B1 fumonisin B1 and ochratoxin A by Rohit Kumar Singh, Narsingh R. Nirala, Sudharsan Sadhasivam, Divagar Muthukumar, Edward Sionov, Giorgi Shtenberg

“…Herein, we present a newly developed nanostructured microarray based on silver-coated porous silicon (Ag-pSi) used as a surface-enhanced Raman scattering (SERS) transducer. …”
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Multiplex peptide microarray profiling of antibody reactivity against neglected tropical diseases derived B-cell epitopes for serodiagnosis in Zimbabwe. by Arthur Vengesai, Thajasvarie Naicker, Herald Midzi, Maritha Kasambala, Tariro L Mduluza-Jokonya, Simbarashe Rusakaniko, Francisca Mutapi, Takafira Mduluza

“…In this framework, we present a pilot study to design and produce a peptide microarray for the integrated surveillance of neglected tropical diseases. …”
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Microarray-Based Comparisons of Ion Channel Expression Patterns: Human Keratinocytes to Reprogrammed hiPSCs to Differentiated Neuronal and Cardiac Progeny by Leonhard Linta, Marianne Stockmann, Qiong Lin, André Lechel, Christian Proepper, Tobias M. Boeckers, Alexander Kleger, Stefan Liebau

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Prenatal diagnosis and molecular cytogenetic analysis of pure chromosome 10p15.3 microdeletion using chromosomal microarray analysis by Na Zhang, Nan Huang, Yu’e Chen, Xinying Chen, Jianlong Zhuang

“…Karyotyping and chromosomal microarray analysis (CMA) was conducted to assess chromosomal abnormalities and detect copy number variations (CNVs) within the families, respectively. …”
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Microarray analysis of LTR retrotransposon silencing identifies Hdac1 as a regulator of retrotransposon expression in mouse embryonic stem cells. by Judith Reichmann, James H Crichton, Monika J Madej, Mary Taggart, Philippe Gautier, Jose Luis Garcia-Perez, Richard R Meehan, Ian R Adams

“…Here we show, and experimentally verify, that cryptic repetitive element probes present in Illumina and Affymetrix gene expression microarray platforms can accurately and sensitively monitor repetitive element expression data. …”
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Effective detection of 148 cases chromosomal mosaicism by karyotyping, chromosomal microarray analysis and QF-PCR in 32,967 prenatal diagnoses by Yi Deng, Lan Zeng, Zhiling Wu, Jin Wang, Mengling Ye, Chun Chen, Ping Wei, Danni Wang, Guangming Deng, Shuyao Zhu

“…Methods A total of 148 fetuses diagnosed with chromosomal mosaicism by karyotyping with copy number variant sequencing (CNV-seq)/ chromosomal microarray analysis (CMA) and quantitative fluorescent polymerase chain reaction (QF-PCR) were selected, and the results from three the methods were compared and further analyzed. …”
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Sequential transcriptome profiling: comparative analysis of normal and canine lymphoma preceding detailed T-cell and B-cell subtype comparison by Yeji Kim, Yeji Kim, Jihyun Kim, Jihyun Kim, Yunji Song, Yunji Song, Keunhwan Jang, Se Eun Kim, Se Eun Kim, Se Eun Kim, Ha-Jung Kim, Ha-Jung Kim

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Screening of molecular markers associated with hornless traits in Qira black sheep by Wen Zhou, Lijun Zhu, Yuwei Peng, Xiaopeng Li, Xuechen Zhang, Zhipeng Han, Jingping Li, Xinyu Bai, Qifeng Gao, Ruizhi Yang, Tao Jiang, Shudong Liu

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Candidate Anxiety‐Related Genes in the Hippocampus of Hatano Male Rats: Anxiolytic Action of Neuromedin U in the Hippocampus by Kaito Sato, Atsuhiro Ishii, Shohei Kobayashi, Taichi Hatakeyama, Gen Watanabe, Tomoko Soga, Ishwar Parhar, Takashi Matsuwaki, Shogo Moriya, Ryo Ohta, Shuichi Chiba, Maiko Kawaguchi

“…The present study focuses on the hippocampus, which is associated with anxiety‐like behavior, and used microarray analysis and RT‐qPCR to select genes with differential expression in the hippocampus between HAA and LAA (Experiment 1). …”
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Identification and characterization of gene networks and key genes related to the high-yield production of milk in high-yield cows using meta-analysis of microarray data by Mahdi Rahmatzadeh, Reza Shokri-Gharelo, Morteza Derakhti-Dizaji, Asghar Bazzaz, Bizhan Mahmoudi

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GPC3 as a potential diagnostic and prognostic marker for lung adenocarcinoma by Wei-qin Wu, Qing-song Sun, Li-li Gao, Ya-juan Jia, Hong-mei Zhao, Hong Sun, Xiang Han

“…Four gene expression profiles were downloaded from GEO and merged into a training cohort, and those genes that were differentially expressed between LUAD and normal samples were selected. We performed LASSO regression, SVM-RFE, and ROC curve analyses, and external validations were conducted using the GSE115002 dataset, TCGA + GTEx datasets, and tissue microarrays (TMAs) of 56 patients with LUAD from our hospital. …”
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Identification of intragenic variants in pediatric patients with intellectual disability in Peru by Hugo Hernán Abarca-Barriga, Flor Vásquez Sotomayor, Renzo Punil-Luciano, María Cristina Laso-Salazar, Heli Jaime Barrón-Pastor

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The miRNA‐mRNA Regulatory Network in Human Hepatocellular Carcinoma by Transcriptomic Analysis From GEO by Razieh Heidari, Vahideh Assadollahi, Seyedeh Negar Marashi, Fatemeh Elahian, Seyed Abbas Mirzaei

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QCanvas: An Advanced Tool for Data Clustering and Visualization of Genomics Data by Nayoung Kim, Herin Park, Ningning He, Hyeon Young Lee, Sukjoon Yoon

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A practical distribution pattern of α-SMA-positive carcinoma associated fibroblasts indicates poor prognosis of patients with pancreatic ductal adenocarcinoma by Bo Li, Meilong Shi, Yang Wang, Penghao Li, Xiaoyi Yin, Guoxiao Zhang, Xiaochao Kang, Huan Wang, Suizhi Gao, Kailian Zheng, Xiaohan Shi, Xiongfei Xu, Yukun Zhou, Hui Jiang, Wei Jing, Shiwei Guo, Gang Jin

“…We utilized a tissue microarray to assess the spatial intensity of α-SMA expression within the tumor microenvironment. …”
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Tissue‐based quantitative proteomics to screen and identify the potential biomarkers for early recurrence/metastasis of esophageal squamous cell carcinoma by Xu‐Wei Cai, Wei‐Wei Yu, Wen Yu, Qin Zhang, Wen Feng, Mi‐Na Liu, Meng‐Hong Sun, Jia‐Qing Xiang, Ya‐Wei Zhang, Xiao‐Long Fu

“…Thirteen proteins were selected by cutoff value of 0.67 fold for underexpression and 1.5‐fold for overexpression. …”
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Identification and validation of a novel autoantibody biomarker panel for differential diagnosis of pancreatic ductal adenocarcinoma by Metoboroghene O. Mowoe, Metoboroghene O. Mowoe, Hisham Allam, Joshua Nqada, Marc Bernon, Karan Gandhi, Sean Burmeister, Urda Kotze, Miriam Kahn, Christo Kloppers, Suba Dharshanan, Zafirah Azween, Pamela Maimela, Paul Townsend, Eduard Jonas, Jonathan M. Blackburn, Jonathan M. Blackburn

“…Identified AAbs were validated in silico using public immunohistochemistry datasets and experimentally using a custom PDAC protein microarray comprising the 11 optimal AAb biomarker panel. …”
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LIMA1-alpha staining predicts curative intent surgery response in HPV negative head and neck cancer by Xi Qiao, Johannes Routila, Mari Tienhaara, Heikki Irjala, Priyadharshini Parimelazhagan Santhi, Teemu Huusko, Linda Nissi, Ilkka Paatero, Noora Lehtinen, Juha Rantala, Toni Viljanen, Ilmo Leivo, Petri Koivunen, Anna Jouppila-Mättö, Rami Taulu, Leif Bäck, Tommy Wilkman, Eeva Haapio, Ilpo Kinnunen, Kari Kurppa, Jukka Westermarck, Sami Ventelä

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Transcriptional responses in different mouse models of septic liver injury differ from those in patients with septic liver injury by Qin Yan, Qin Yan, Qin Yan, Wei Fan, Wei Fan, Wei Fan, Xinsen He, Xinsen He, Xinsen He, Shi Zheng, Shi Zheng, Shi Zheng, Xiaolin Zhong, Xiaolin Zhong, Xiaolin Zhong

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Differential gene expression analysis in patients with primary hyperhidrosis by Ting Pu, Muhammad Ameen Jamal, Muhammad Nauman Tahir, Salman Ullah, Maher Un Nisa Awan, Asif Shahzad, Faisal Mahmood

“…Based on the highest expression of ITPR2 in hyperhidrosis, it was selected for PCR amplification as well as sequencing. …”
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