A microarray platform-independent classification tool for cell of origin class allows comparative analysis of gene expression in diffuse large B-cell lymphoma. by Matthew A Care, Sharon Barrans, Lisa Worrillow, Andrew Jack, David R Westhead, Reuben M Tooze

“…This shows superior survival separation for assigned Activated B-cell (ABC) and Germinal Center B-cell (GCB) DLBCL classes relative to a range of other classifiers. DAC is effective on data derived from multiple microarray platforms and formalin fixed paraffin embedded samples and is parsimonious, using 20 classifier genes. …”
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Using machine learning to discover DNA metabolism biomarkers that direct prostate cancer treatment by Ali Shakeri Abroudi, Melika Djamali, Hossein Azizi

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Evaluation of Genomic Variants in Non-syndromic Congenital Heart Disease in Turkish Pediatric Group by Sinem Kocagil, Büşra Özkan, Sabri Aynacı, Tuğçem Akın, Ezgi Susam, Ebru Erzurumluoğlu Gökalp, Beyhan Durak Aras, Birsen Uçar, Sevilhan Artan, Oğuz Çilingir

“…Results: In microarray analysis, 9 novel copy-number variations (CNVs) that were not reported in population databases, and included OMIM genes were detected in 1.5% (6/40) of the patients. …”
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GPC3 as a potential diagnostic and prognostic marker for lung adenocarcinoma by Wei-qin Wu, Qing-song Sun, Li-li Gao, Ya-juan Jia, Hong-mei Zhao, Hong Sun, Xiang Han

“…Four gene expression profiles were downloaded from GEO and merged into a training cohort, and those genes that were differentially expressed between LUAD and normal samples were selected. We performed LASSO regression, SVM-RFE, and ROC curve analyses, and external validations were conducted using the GSE115002 dataset, TCGA + GTEx datasets, and tissue microarrays (TMAs) of 56 patients with LUAD from our hospital. …”
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Phenomenon of loss of heterozygosity in tumour tissue of breast cancer: association with expression of monoresistance genes by M. M. Tsyganov, I. V. Deryusheva, E. Yu. Garbukov, M. K. Ibragimova, P. V. Kazantseva, V. A. Bychkov, E. M. Slonimskaya, N. V. Litviakov

“…DNA was extracted from 68 biopsy specimens of tumour tissues using QIAamp DNA mini Kit (Qiagen, Germany). LOH status was detected using microarray analysis using high density DNA-chip manufactured by Affymetrix CytoScanTM HD Array company.Results. …”
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Hemizygous contiguous gene deletion within Xq28 that includes BCAP31, ABCD1, SRPK3 and SSR4: case report and literature review by Joan Chern-Hui Lien, Vinay D. Chandrasekaran, Tarachandra M. Narumanchi, Melissa S. Napoli, Jo Elle G. Peterson, Charles A. Williams

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Higher expression of mir‐31‐5p is associated with reduced risk of head and neck keloid recurrence following surgical resection by Albert M. Levin, Oghenefejiro Okifo, Katherine Buhl, Takahiro Ouchi, Bianca Parker, Jessica Tan, Indrani Datta, Xiangguo Dai, Yalei Chen, Nallasivam Palanisamy, Jesse Veenstra, Shannon Carskadon, Jia Li, David Ozog, Christian E. Keller, Dhananjay Chitale, Kevin R. Bobbitt, Howard C. Crawford, Nina Steele, Qing‐Sheng Mi, Lamont R. Jones

“…Methods Using a tissue microarray, mir‐31‐5p expression was measured with miRNAscope, and mir‐31‐5p cell positivity was determined with QuPath. …”
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Dissection of a complex transcriptional response using genome‐wide transcriptional modelling by Martino Barenco, Daniel Brewer, Efterpi Papouli, Daniela Tomescu, Robin Callard, Jaroslav Stark, Michael Hubank

“…We examined the transcriptional response to DNA damage in a human T cell line (MOLT4) using microarrays. By measuring both mRNA accumulation and degradation over a short time course, we were able to construct a mechanistic model of the transcriptional response. …”
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A novel multiple marker microarray analyzer and methodology to predict major obstetric syndromes using surface markers of circulating extracellular vesicles from maternal plasma by Malene Møller Jørgensen, Rikke Bæk, Jenni K. Sloth, Rami Sammour, Adi Sharabi‐Nov, Manu Vatish, Hamutal Meiri, Marei Sammar

“…Plasma samples were tested using a multiple microarray analyzer. Glass slides with 17 antibodies against EV surface receptors ‐ were incubated with raw plasma samples, detected by biotinylated secondary antibodies specific to EVs or placental EVs (PEVs), and labeled with cyanine 5–streptavidin. …”
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Genome-wide profiling of micro-RNA expression in gefitinib-resistant human lung adenocarcinoma using microarray for the identification of miR-149-5p modulation by Yong Hu, Xiaobing Qin, Dali Yan, Haixia Cao, Leilei Zhou, Fan Fan, Jialan Zang, Jie Ni, Xiaoyue Xu, Huanhuan Sha, Siwen Liu, Shaorong Yu, Jianzhong Wu, Rong Ma, Jifeng Feng

“…We compared the micro-RNA expression profiles of the HCC827 cells HCC827/GR-8-1 using Agilent micro-RNA microarrays. The micro-RNAs, such as the miR-149-5p, were up- or downregulated and associated with acquired gefitinib resistance. …”
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PET Foils Functionalized with Reactive Copolymers as Adaptable Microvolume ELISA Spot Array Platforms for Multiplex Serological Analysis of SARS-CoV-2 Infections by Sylwia Pniewska, Marcin Drozd, Alessandro Mussida, Dario Brambilla, Marcella Chiari, Waldemar Rastawicki, Elżbieta Malinowska

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The Comparison of Three Measures in Feature Selection by SONG Zhi-chao, KANG Jian, SUN Guang-lu, HE Yong-jun

“…Three representative linear or nonlinear measures，linear correlation coefficient，symmetrical uncertainty，and mutual information are selected. By combining them with the fast correlation-based filter ( FCBF) feature selection method，we make the comparison of selected feature subset from 8 gene microarray and image datasets. …”
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A Versatile High‐Throughput Single‐Cell Screening Platform for Profiling Antigen‐Specific Long‐Lived B Cells in Blood and Bone Marrow by Tian Zhao, Yuqing Lei, Chang Liu, Dong Zhang, Kaiyi Li, Sisi Shan, Chenyu Li, Zimeng Wei, Yuhan Yang, Ting Zhang, Kai Sun, Haoran Sun, Linqi Zhang, Peng Liu

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QCanvas: An Advanced Tool for Data Clustering and Visualization of Genomics Data by Nayoung Kim, Herin Park, Ningning He, Hyeon Young Lee, Sukjoon Yoon

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Tissue‐based quantitative proteomics to screen and identify the potential biomarkers for early recurrence/metastasis of esophageal squamous cell carcinoma by Xu‐Wei Cai, Wei‐Wei Yu, Wen Yu, Qin Zhang, Wen Feng, Mi‐Na Liu, Meng‐Hong Sun, Jia‐Qing Xiang, Ya‐Wei Zhang, Xiao‐Long Fu

“…Thirteen proteins were selected by cutoff value of 0.67 fold for underexpression and 1.5‐fold for overexpression. …”
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Investigation of local corrosion behavior and mechanism for TA2/HAl77-2/316L SS coupling systems under seawater liquid film by Hong Ju, Hanzhi Li, Lu Fang, Haitong Lu, Yifan Wei

“…Local corrosion parameters, such as the maximum potential difference (ΔEmax), the maximum anode current density (Ia,max), the local corrosion intensity factor (LCII), and the cathode to anode area ratio (Sc/Sa) were obtained to quantitatively characterize the local corrosion degree of microarray electrodes. The results showed that HAl77-2 and most of the 316L SS electrode wires in the microarray electrodes served as anodes, while TA2 and the remainder of the 316L SS electrode wires performed as cathodes. …”
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A cross-sectional pilot study to estimate the frequency of minor blood group alleles and phenotypes in RhD-negative North Indian blood donors by DNA microarray analysis by Gita Negi, Sheetal Malhotra, Bela Goyal, Praveen Kumar Singh, Anissa Atif Mirza

“…Hence, we planned to estimate frequencies of blood group alleles/phenotypes using DNA microarray analysis in the north Indian RhD-negative blood donor population. …”
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Exome sequencing and prenatal skeletal abnormalities: comprehensive review and meta-analysis and way forward by Mengting Jiang, Mengting Jiang, Bin Zhang, Jing Wang, Cui Wei, Xiuzhen Mao, Bin Yu

“…ObjectiveTo assess the detection rate of exome sequencing (ES) in fetuses diagnosed as skeletal abnormalities (SKA) with normal karyotype or chromosomal microarray analysis (CMA) results.MethodsWe conducted electronic searches in four databases, focusing on studies involving ES in fetuses with SKA. …”
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The Genetics of 241 Fetuses With Talipes Equinovarus: A 8‐Year Monocentric Retrospective Study by Pingshan Pan, Dongbing Huang, Jiangxuan Wei, Wei He, Peng Huang, Sheng Yi, Jing Huang, Dahua Meng, Shuyin Tan, Xinyan Li, Hongwei Wei, Linlin Wang

“…ABSTRACT Objective This study aims to investigate the utility of chromosomal microarray analysis (CMA) and whole exome sequencing (WES) in fetuses diagnosed with talipes equinovarus (TE), as well as to explore the genetic factors contributing to TE. …”
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Unveiling a rare genetic aberration: A case study of Prader-Willi syndrome (PWS) with atypical 15q11.2-q13.3 deletion by Senthilraja Ramalingam, Srividya Ganapathy, Jayaswathi Kanchepalli, Vani Jayaraj, Mani Mariyappa

“…The present case report describes the chromosomal anomalies suspected to be present in a neonate, detected using Chromosomal Microarray analysis, an advanced platform for genetic analysis. …”
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