Evaluating methods for identifying and quantifying Streptococcus pneumoniae co-colonization using next-generation sequencing data by Jada Hackman, Martin L. Hibberd, Todd D. Swarthout, Jason Hinds, James Ashall, Carmen Sheppard, Gerry Tonkin-Hill, Kate Gould, Comfort Brown, Jacquline Msefula, Andrew A. Mataya, Michiko Toizumi, Lay-Myint Yoshida, Neil French, Robert S. Heyderman, Stefan Flasche, Brenda Kwambana, Stéphane Hué

“…Across the 24 individuals, the microarray detected 77 non-unique serotypes, of which 42 occurred at high relative abundance (>10%) (per individual, median, 3; range, 1–6 serotypes). …”
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Microarray construction of antimicrobial resistance genes from Salmonella by MA Meng-gen, WANG Hong-ning, YU Yong, ZHANG Dong, LIU Shi-gui

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Generalizability of machine learning models for diabetes detection a study with nordic islet transplant and PIMA datasets by Dinesh Chellappan, Harikumar Rajaguru

Subjects: “…Early diabetes detection…”
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Development and Validation of Protein Microarray Technology for Simultaneous Inflammatory Mediator Detection in Human Sera by Senthooran Selvarajah, Ola H. Negm, Mohamed R. Hamed, Carolyn Tubby, Ian Todd, Patrick J. Tighe, Tim Harrison, Lucy C. Fairclough

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Mutable Composite Firefly Algorithm for Microarray-Based Cancer Classification by Fathima Fajila, Yuhanis Yusof

Subjects: “…Biomarker detection…”
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Identification and validation of a novel autoantibody biomarker panel for differential diagnosis of pancreatic ductal adenocarcinoma by Metoboroghene O. Mowoe, Metoboroghene O. Mowoe, Hisham Allam, Joshua Nqada, Marc Bernon, Karan Gandhi, Sean Burmeister, Urda Kotze, Miriam Kahn, Christo Kloppers, Suba Dharshanan, Zafirah Azween, Pamela Maimela, Paul Townsend, Eduard Jonas, Jonathan M. Blackburn, Jonathan M. Blackburn

“…Autoantibodies (AAbs) in principle make attractive biomarkers as they arise early in disease, report on disease-associated perturbations in cellular proteomes, and are static in response to other common stimuli, yet are measurable in the periphery, potentially well in advance of the onset of clinical symptoms.MethodsHere, we used high-throughput, custom cancer antigen microarrays to identify a clinically relevant autoantibody biomarker combination able to differentially detect PDAC. …”
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Assessment of centrifugation using for accelerated immunological microarray analysis for blood cells investigation by A. V. Shishkin, N. G. Ovchinina, S. S. Bessmeltsev

Subjects: “…immunological microarray…”
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Pico-Scale Digital PCR on a Super-Hydrophilic Microarray Chip for Multi-Target Detection by Qingyue Xian, Jie Zhang, Yu Ching Wong, Yibo Gao, Qi Song, Na Xu, Weijia Wen

“…In this study, we present a super-hydrophilic microarray chip specifically designed for dPCR, featuring streamlined loading methods compatible with micro-electro-mechanical systems (MEMS) technology. …”
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LIMA1-alpha staining predicts curative intent surgery response in HPV negative head and neck cancer by Xi Qiao, Johannes Routila, Mari Tienhaara, Heikki Irjala, Priyadharshini Parimelazhagan Santhi, Teemu Huusko, Linda Nissi, Ilkka Paatero, Noora Lehtinen, Juha Rantala, Toni Viljanen, Ilmo Leivo, Petri Koivunen, Anna Jouppila-Mättö, Rami Taulu, Leif Bäck, Tommy Wilkman, Eeva Haapio, Ilpo Kinnunen, Kari Kurppa, Jukka Westermarck, Sami Ventelä

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Automated evaluation and normalization of immunohistochemistry on tissue microarrays with a DNA microarray scanner by Wolfgang Haedicke, Helmut H. Popper, Charles R. Buck, Kurt Zatloukal

“…Importantly, double-label indirect immunofluorescence detection with the cDNA scanner demonstrates that one reference antigen can normalize tumor marker immunosignal for the cellular content of tissue microarray tissue cores. …”
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Laboratory validation of formal concept analysis of the methylation status of microarray-detected genes in primary breast cancer by Samar K Kassim, Hanan H Shehata, Marwa M Abou-Alhussein, Maha M Sallam, Islam Ibrahim Amin

“…These results validate the methylation-based microarray analysis, thus trust their output in the future.…”
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Ensemble Algorithm Based on Gene Selection, Data Augmentation, and Boosting Approaches for Ovarian Cancer Classification by Zne-Jung Lee, Jing-Xun Cai, Liang-Hung Wang, Ming-Ren Yang

“…<b>Background:</b> Ovarian cancer is a difficult and lethal illness that requires early detection and precise classification for effective therapy. …”
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Role of transcriptomics in the study of oral cancer by Prabhu Manickam Natarajan, Vidhya Rekha Umapathy

“…Oral cancer, a formidable public health challenge, demands innovative approaches for early detection and effective treatment. This review explores the transformative role of transcriptomics in oral cancer research, leveraging cutting-edge technologies to decode the RNA landscape of tumors. …”
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Evaluation of the performance of two carbodiimide-based cyanine dyes for detecting changes in mRNA expression with DNA microarrays by Naoki Kimura, Taka-aki Tamura, Masahiro Murakami

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Advancing Dermatomycosis Diagnosis: Evaluating a Microarray-Based Platform for Rapid and Accurate Fungal Detection—A Pilot Study by Vittorio Ivagnes, Elena De Carolis, Carlotta Magrì, Riccardo Torelli, Brunella Posteraro, Maurizio Sanguinetti

“…This study evaluates the EUROArray Dermatomycosis Platform, a microarray-based molecular assay, for its performance in identifying fungi causing dermatomycosis. …”
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Comparative analysis of hybrid-SNP microarray and nanopore sequencing for detection of large-sized copy number variants in the human genome by Catarina Silva, José Ferrão, Bárbara Marques, Sónia Pedro, Hildeberto Correia, Ana Valente, António Sebastião Rodrigues, Luís Vieira

“…In this work, we used nanopore sequencing technology to sequence 2 human cell lines at low depth of coverage to call copy number variations (CNV), and compared the results variant by variant with chromosomal microarray (CMA) results. Results We analysed sequencing data using CuteSV and Sniffles2 variant callers, compared breakpoints based on hybrid-SNP microarray, nanopore sequencing and Sanger sequencing, and analysed CNV coverage. …”
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Case of 7p22.1 Microduplication Detected by Whole Genome Microarray (REVEAL) in Workup of Child Diagnosed with Autism by Veronica Goitia, Marcial Oquendo, Robert Stratton

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Effects of oxidized phospholipids on gene expression in RAW 264.7 macrophages: a microarray study. by Daniel Koller, Hubert Hackl, Juliane Gertrude Bogner-Strauß, Albin Hermetter

“…In this study we present the effects of 1-palmitoyl-2-glutaroyl-sn-glycero-3-phosphocholine (PGPC) and 1-palmitoyl-2-(5-oxovaleroyl)-sn-glycero-3-phosphocholine (POVPC) on gene expression in RAW 264.7 macrophages using cDNA microarrays. …”
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Method for Printing Functional Protein Microarrays by James B. Delehanty, Frances S. Ligler

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Global effects of DNA replication and DNA replication origin activity on eukaryotic gene expression by Larsson Omberg, Joel R Meyerson, Kayta Kobayashi, Lucy S Drury, John F X Diffley, Orly Alter

“…This confirms previous predictions from mathematical modeling of a global causal coordination between DNA replication origin activity and mRNA expression, and shows that mathematical modeling of DNA microarray data can be used to correctly predict previously unknown biological modes of regulation.…”
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