CRISPR-Cas9 and Its Bioinformatics Tools: A Systematic Review by Alicja Jasieniecka, Inês Domingues

“…This systematic review summarizes the functionality and key features of such tools. Studies published after 2012 were selected through searches in PubMed, Google Scholar, and other sources, with the final search conducted on 9 November 2024. …”
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Systematic Literature Review on the Utilization of Tuber Crop Skins in the Context of Circular Agriculture by Aziz Caliskan, Norhidayah Abdullah, Noriza Ishak, Divine Senanu Ametefe, Imene Tatar Caliskan

“…Method: A rigorous review protocol was applied to analyze 26 articles sourced from ScienceDirect and Web of Science. The selection criteria focused on works that explore the application of tuber crop skins in various domains, ensuring a comprehensive coverage of the subject matter. …”
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Comparing statistical learning methods for complex trait prediction from gene expression. by Noah Klimkowski Arango, Fabio Morgante

“…The methods considered differ in assumptions about the distribution of gene effects-ranging from models that assume that every gene affects the trait to more sparse models-and their ability to capture gene-gene interactions. We also used functional annotation (i.e., Gene Ontology (GO)) as a source of biological information to inform prediction models. …”
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Per-Hop Reversed Packet Auctions for Cooperative Routing in Mobile Wireless Networks by Lucas S. Brito, Marcelo M. Carvalho

“…Previous works on the subject have either tackled cooperation in the relay of messages alone or in both routing and relay functionalities. In the latter case, path selection is usually carried out at the destination node, which renders significant delays because the selected path needs to be conveyed all the way back to the source node before any data packet can be transmitted. …”
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Identification of a PANoptosis-related gene signature reveals therapeutic potential of SFRP2 in pulmonary arterial hypertension by Li Li, Mukamengjiang Juaiti

“…Feature genes were identified through weighted gene co-expression network analysis (WGCNA), least absolute shrinkage and selection operator (LASSO), and random forest (RF) algorithms, with validation performed on external datasets. …”
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EXPLORING AUTOMATED SUMMARIZATION: FROM EXTRACTION TO ABSTRACTION by Svetlana G. Sorokina

“…The study draws on a selection of scientific publications across various disciplines, testing the functionality and output quality of automated summarization tools such as Summate.it, WordTune, SciSummary, Scholarcy, and OpenAI ChatGPT-4. …”
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Modeling of the ORNL PCA Benchmark Using SCALE6.0 Hybrid Deterministic-Stochastic Methodology by Mario Matijević, Dubravko Pevec, Krešimir Trontl

“…The shielding analysis was performed using multigroup shielding library v7_200n47g derived from general purpose ENDF/B-VII.0 library. As a source of response functions for reaction rate calculations with MAVRIC we used international reactor dosimetry libraries (IRDF-2002 and IRDF-90.v2) and appropriate cross-sections from transport library v7_200n47g. …”
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Liver cancer-specific prognostic model developed using endoplasmic reticulum stress-related LncRNAs and LINC01011 as a potential therapeutic target by Xiao Du, Ning Wei, Anqi Wang, Guoping Sun

“…Drug sensitivity varied between the risk groups. LINC01011 was selected for functional assays. Colony formation assay and CCK-8 assay revealed that silencing LINC01011 suppressed liver cancer cell proliferation. …”
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De novo transcriptome assembly and discovery of drought-responsive genes in white spruce (Picea glauca). by Zoé Ribeyre, Claire Depardieu, Julien Prunier, Gervais Pelletier, Geneviève J Parent, John Mackay, Arnaud Droit, Jean Bousquet, Philippe Nolet, Christian Messier

“…In addition, it provides a valuable source of new genetic data that could contribute to genetic selection strategies aimed at enhancing the drought resistance and resilience of white spruce to changing climates.…”
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Attack traffic allocation and load balancing mechanism for SDN by LI Man, ZHOU Huachun, XU Qi, DENG Shuangxing, ZOU Tao, ZHANG Ruyun

“…The traffic allocation problem was modeled as a Markov decision process (MDP), where the reward function included both resource consumption and delay. …”
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Spectrum of Cortactin Isoforms in the Urine of Patients with Liver Cirrhosis and Their Diagnostic Value as a Potential Molecular Marker of its Severity by Fayura O., Starikovych M., Abrahamovych O., Abrahamovych M., Stoyka R., Kit Yu.

“…Recently, the protein of SRC8 (Sarc family protein kinase substrate or cortactin) was detected among 12 new proteins in urine protein analyzes in breast cancer patients. …”
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Repair of aircraft engine parts made of heat-resistant nickel alloys using additive plasma technologies by Konstantin Balushok, Sergey Chigileychik

“…No wear of the labyrinth ridges or cracks was detected. The functionality of the restored disk has been confirmed. …”
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Regional and strain-level prevalence of nitrogen-fixing Bradyrhizobium with potential N2O reduction in South Korea by Jaeyoung Ro, Hor-Gil Hur, Sujin Lee

“…Abstract Agricultural practices are the largest anthropogenic source of nitrous oxide (N2O), a potent greenhouse gas contributing to global climate change. …”
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Repair-mediated duplication by capture of proximal chromosomal DNA has shaped vertebrate genome evolution. by John K Pace, Shurjo K Sen, Mark A Batzer, Cédric Feschotte

“…These events are thought to be a source of genomic instability and human diseases, but it is unclear whether they have contributed significantly to genome evolution. …”
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Devicology: Expanding fieldwork possibilities for architectural observations in inhabited interiors by Tatiana Knoroz

“…These visually chaotic yet surprisingly functional structures are the only tool of the current dwellers to negotiate with the restricting standard apartment plans that were originally designed for a very different sector of the Japanese population. …”
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Recent advances in metal-organic frameworks for electrochemical sensing applications by Magesh Kumar Muthukumaran, Muthukumar Govindaraj, Sakthivel Kogularasu, Balasubramanian Sriram, Bharathi Kannan Raja, Sea-Fue Wang, Guo-Ping Chang-Chien, Arockia Selvi J

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Tracking the genome-wide occupancy of Arabidopsis LEAFY COTYLEDON1 in endosperm development by Jingpu Song, Xin Xie, Ioannis Mavraganis, Bianyun Yu, Wenyun Shen, Hui Yang, Daoquan Xiang, Yangdou Wei, Yuhai Cui, Jitao Zou

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Reactions of Citrullus amarus and Cucumis metuliferus to Meloidogyne chitwoodi, Meloidogyne enterolobii and Meloidogyne luci by Aida Magdalena FULLANA, Carla MALEITA, Duarte SANTOS, Isabel ABRANTES, Francisco Javier SORRIBAS, Ariadna GINÉ

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Transient proteolysis reduction of Nicotiana benthamiana-produced CAP256 broadly neutralizing antibodies using CRISPR/Cas9 by Advaita Acarya Singh, Advaita Acarya Singh, Priyen Pillay, Previn Naicker, Kabamba Alexandre, Kanyane Malatji, Lukas Mach, Herta Steinkellner, Juan Vorster, Rachel Chikwamba, Tsepo L. Tsekoa

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Glyceraldehyde-3-phosphate dehydrogenase acts as a mitochondrial trans-S-nitrosylase in the heart. by Mark J Kohr, Elizabeth Murphy, Charles Steenbergen

“…Mitochondrial proteins have been shown to be common targets of S-nitrosylation (SNO), but the existence of a mitochondrial source of nitric oxide remains controversial. SNO is a nitric oxide-dependent thiol modification that can regulate protein function. …”
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