Integrating equity, diversity, and inclusion throughout the lifecycle of artificial intelligence for healthcare: a scoping review. by Ting Wang, Elham Emami, Dana Jafarpour, Raymond Tolentino, Genevieve Gore, Samira Abbasgholizadeh Rahimi

“…Previous research has shown that AI models improve when socio-demographic factors such as gender and race are considered. …”
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Identification of novel gut microbiota-related biomarkers in cerebral hemorrhagic stroke by Fengli Ye, Huili Li, Hongying Li, Xiue Mu

“…Functional enrichment, gene set enrichment analysis (GSEA), and protein–protein interaction (PPI) analyses were performed. Hub genes were screened using LASSO, RandomForest, and SVM-RFE algorithms. …”
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Identification of markers correlating with mitochondrial function in myocardial infarction by bioinformatics. by Wenlong Kuang, Jianwu Huang, Yulu Yang, Yuhua Liao, Zihua Zhou, Qian Liu, Hailang Wu

“…The 10 MI-related hub MitoDEGs were then obtained by eight different algorithms. Immunoassays showed a significant increase in monocyte macrophage and T cell infiltration. …”
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Integrative machine learning and molecular simulation approaches identify GSK3β inhibitors for neurodegenerative disease therapy by Hassan H. Alhassan

“…Among all models, the Random Forest (RF) algorithm had the best prediction accuracy, with a value of 0.6832 on the test set and 0.7432 on the training set, and was employed to screen the target library of 11,032 phytochemicals. …”
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Systematic elucidation of the effective constituents and potential mechanisms of Scrophulariae Radix against neoplasm based on LC-MS, network pharmacology, and molecular docking ap... by Shu-jie Yu, Xiao-bin Kong, Xin Jin, Meng-yi Shan, Gang Cheng, Pei-lu Wang, Wen-long Li, Pei-yuan Zhao, Yun-jie Sheng, Bing-qian He, Qi Shi, Hua-qiang Li, Qi-ming Zhao, Lu-ping Qin, Lu-ping Qin, Xiong-yu Meng, Xiong-yu Meng

“…As a result, the material–liquid ratio was significantly reduced from 100 g/mL to 32 g/mL, and the extraction efficiency was 1.332%, which was close to the predicted value of 1.346% in the response surface method, indicating that the algorithm model had a good fit. Next, a total of 738 compounds, including 161 terpenoids, 144 phenolic acids, 51 alkaloids, 24 flavonoids, 34 saccharides, 32 lignans and coumarins, 45 amino acids and derivatives, 23 organic acids, 134 lipids, 22 nucleotides and derivatives, and 59 other ingredients, were characterized from Scrophulariae Radix based on the accurate precursor and product ions, retention time, standards, fragmentation patterns, and previous publications. …”
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Genome-wide identification and expression analysis of phytochrome gene family in Aikang58 wheat (Triticum aestivum L.) by Zhu Yang, Zhu Yang, Wenjie Kan, Wenjie Kan, Ziqi Wang, Caiguo Tang, Yuan Cheng, Yuan Cheng, Dacheng Wang, Dacheng Wang, Yameng Gao, Lifang Wu, Lifang Wu

“…Additionally, the least absolute shrinkage and selection operator (LASSO) regression algorithm in machine learning was used to screen transcription factors such as bHLH, WRKY, and MYB that influenced the expression of TaAkPHY genes. …”
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The two ends of the spectrum: comparing chronic schizophrenia and premorbid latent schizotypy by actigraphy by Szandra László, Ádám Nagy, József Dombi, Emőke Adrienn Hompoth, Emese Rudics, Zoltán Szabó, András Dér, András Búzás, Zsolt János Viharos, Anh Tuan Hoang, Vilmos Bilicki, István Szendi

“…By applying model-explaining tools to the well-performing models, we could conclude the movement patterns and characteristics of the groups. …”
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Deciphering the role of cuproptosis in the development of intimal hyperplasia in rat carotid arteries using single cell analysis and machine learning techniques by Miao He, Hui Chen, Zhengli Liu, Boxiang Zhao, Xu He, Qiujin Mao, Jianping Gu, Jie Kong

“…Methods: We downloaded single-cell sequencing and bulk transcriptome data from the GEO database to screen for copper-growth-associated genes (CAGs) using machine-learning algorithms, including Random Forest and Support Vector Machine. …”
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Optimized Landing Site Selection at the Lunar South Pole: A Convolutional Neural Network Approach by Yongjiu Feng, Haoteng Li, Xiaohua Tong, Pengshuo Li, Rong Wang, Shurui Chen, Mengrong Xi, Jingbo Sun, Yuhao Wang, Huaiyu He, Chao Wang, Xiong Xu, Huan Xie, Yanmin Jin, Sicong Liu

“…Although intelligent algorithms have been increasingly investigated for this purpose, the application of deep learning techniques in landing site selection remains unexplored. …”
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Shared pathogenic mechanisms linking obesity and idiopathic pulmonary fibrosis revealed by bioinformatics and in vivo validation by Linjie Chen, Haojie Chen, Zinan Chen, Kunyi Zhang, Hongsen Zhang, Jiahe Xu, Tongsheng Chen

“…Functional enrichment (GO/KEGG), protein-protein interaction (PPI) networks, and machine learning algorithms were applied to screen hub genes, validated by ROC curves. …”
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Prediction and validation of anoikis-related genes in neuropathic pain using machine learning. by Yufeng He, Ye Wei, Yongxin Wang, Chunyan Ling, Xiang Qi, Siyu Geng, Yingtong Meng, Hao Deng, Qisong Zhang, Xiaoling Qin, Guanghui Chen

“…We also used rats to construct an NP model and validated the analyzed hub genes using hematoxylin and eosin (H&E) staining, real-time polymerase chain reaction (PCR), and Western blotting assays.…”
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Prognostic, oncogenic roles, and pharmacogenomic features of AMD1 in hepatocellular carcinoma by Youliang Zhou, Yi Zhou, Jiabin Hu, Yao Xiao, Yan Zhou, Liping Yu

“…Univariate Cox regression analysis and Pearson correlation were used to screen for AMD1-related genes (ARGs). Multidimensional bioinformatic algorithms were utilized to establish a risk score model for ARGs. …”
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Identification of glucocorticoid-related genes in systemic lupus erythematosus using bioinformatics analysis and machine learning. by Yinghao Ren, Weiqiang Chen, Yuhao Lin, Zeyu Wang, Weiliang Wang

“…Furthermore, we utilized least absolute shrinkage and selection operator (LASSO) regression and Random Forest (RF) algorithms to screen for hub genes. We then validated the expression of these hub genes and constructed nomograms for further validation. …”
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LABORATORY OF CLINICAL IMMUNOLOGY N.V. SKLIFOSOVSKY RESEARCH INSTITUTE FOR EMERGENCY MEDICINE (HISTORY AND PRESENT) by M. A. Godkov, G. V. Bulava

“…During 45 years of work of immunological service formed the algorithm of the adequate immunological screening was formed, number of innovative methods of diagnosis was developed, the ideology of post-test counseling of patients by immunologists was created, mathematical methods of storage, modeling and processing of research results was introduced. …”
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Estimation of potato leaf area index based on spectral information and Haralick textures from UAV hyperspectral images by Jiejie Fan, Jiejie Fan, Yang Liu, Yang Liu, Yiguang Fan, Yihan Yao, Riqiang Chen, Mingbo Bian, Yanpeng Ma, Huifang Wang, Haikuan Feng, Haikuan Feng, Haikuan Feng

“…Three types of spectral data—original spectral reflectance (OSR), first-order differential spectral reflectance (FDSR), and vegetation indices (VIs)—along with three types of Haralick textures—simple, advanced, and higher-order—were analyzed for their correlation with LAI across multiple growth stages. A model for LAI estimation in potato at multiple growth stages based on spectral and textural features screened by the successive projection algorithm (SPA) was constructed using partial least squares regression (PLSR), random forest regression (RFR) and gaussian process regression (GPR) machine learning methods. …”
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Geographic variation in secondary metabolites contents and their relationship with soil mineral elements in Pleuropterus multiflorum Thunb. from different regions by Yaling Yang, Siman Wang, Ruibin Bai, Feng Xiong, Yan Jin, Hanwei Liu, Ziyi Wang, Chengyuan Yang, Yi Yu, Apu Chowdhury, Chuanzhi Kang, Jian Yang, Lanping Guo

“…Conversely, a positive correlation was found between the contents of elements Na, Ce, Ti, and physcion and THSG-5, 2 components that exhibited higher levels in Deqing. Furthermore, an RF algorithm was employed to establish an interrelationship model, effectively forecasting the abundance of the majority of differential metabolites in HSW samples based on the content data of soil mineral elements. …”
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Identification of aging-related biomarkers and immune infiltration analysis in renal stones by integrated bioinformatics analysis by Yuanzhao Wang, Nana Chen, Bangqiu Zhang, Pingping Zhuang, Bingtao Tan, Changlong Cai, Niancai He, Hao Nie, Songtao Xiang, Chiwei Chen

“…Using logistic regression, SVM, and LASSO regression algorithms, a successful early-diagnosis model for RS was developed, yielding 7 key genes: CNR1, KIT, HTR2A, DES, IL33, UCP2, and PPT1. …”
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Identification of potential metabolic biomarkers and immune cell infiltration for metabolic associated steatohepatitis by bioinformatics analysis and machine learning by Haoran Xie, Junjun Wang, Qiuyan Zhao

“…Protein-Protein Interaction (PPI) network and machine learning algorithms, including Least Absolute Shrinkage and Selection Operator (LASSO) regression, Support Vector Machine-Recursive Feature Elimination (SVM-RFE), and Random Forest (RF), were applied to screen for signature MRDEGs. …”
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Nanomaterial isolated extracellular vesicles enable high precision identification of tumor biomarkers for pancreatic cancer liquid biopsy by Zachary F. Greenberg, Samantha Ali, Andrew Brock, Jinmai Jiang, Thomas D. Schmittgen, Song Han, Steven J. Hughes, Kiley S. Graim, Mei He

“…Through modelling the ATP6V0B cycling threshold, we reported 3 models with AUCs between 0.86 and 0.88, showcasing an enabling and clinically translatable liquid biopsy approach for early detection of pancreatic cancer using circulating EVs. …”
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An EfficientNet integrated ResNet deep network and explainable AI for breast lesion classification from ultrasound images by Kiran Jabeen, Muhammad Attique Khan, Ameer Hamza, Hussain Mobarak Albarakati, Shrooq Alsenan, Usman Tariq, Isaac Ofori

“…Explainable artificial intelligence‐based analysed the performance of trained models. After that, a new feature selection technique is proposed based on the cuckoo search algorithm called cuckoo search controlled standard error mean. …”
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