Integrated Analysis of the 2022 SARS-CoV-2 Omicron Lineage Replacement Dynamics in Connecticut, US by Nicholas F. G. Chen, Kien Pham, Chrispin Chaguza, Rafael Lopes, Fayette Klaassen, Chaney C. Kalinich, Yale SARS-CoV-2 Genomic Surveillance Initiative, Nicholas Kerantzas, Sameer Pandya, David Ferguson, Wade Schulz, Daniel M. Weinberger, Virginia E. Pitzer, Joshua L. Warren, Nathan D. Grubaugh, Anne M. Hahn

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Host taxonomy and environment shapes insectivore viromes and viral spillover risks in Southwestern China by Ji-Hu Yang, Chun-Feng Luo, Rong Xiang, Jiu-Meng Min, Zong-Ti Shao, Yi-Lin Zhao, Lu Chen, Lin Huang, Yun Zhang, Shun-Shuai Liu, Yu-Qiong Li, En-Nian Pu, Wen-Qiang Shi, Hai-Feng Pan, Wei-Jun Chen, Chun-Hong Du, Jia-Fu Jiang

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Secondary structure of the SARS-CoV-2 genome is predictive of nucleotide substitution frequency by Zach Hensel

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Fixation and reversion of mutations in the receptor-binding domain of the SARS-CoV-2 spike protein: A 2020–2024 analysis by Daniele Focosi, Pietro Giorgio Spezia, Fabrizio Maggi

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Yaravirus brasiliense genomic structure analysis and its possible influence on the metabolism by Ana Karoline Nunes-Alves, Jônatas Santos Abrahão, Sávio Torres de Farias

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Predicting pathogen evolution and immune evasion in the age of artificial intelligence by D.J. Hamelin, M. Scicluna, I. Saadie, F. Mostefai, J.C. Grenier, C. Baron, E. Caron, J.G. Hussin

Subjects: “…Viral evolution…”
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Identification of Clinical and Genomic Features Associated with SARS-CoV-2 Reinfections by Francisco Muñoz-López, Antoni E. Bordoy, Francesc Català-Moll, Verónica Saludes, David Panisello Yagüe, Mariona Parera, Ignacio Blanco, Pere-Joan Cardona, Cristina Casañ, Ana Blanco-Suárez, Sandra Franco, Álvaro F. García-Jiménez, Roger Paredes, Bonaventura Clotet, Lourdes Mateu, Marc Noguera-Julian, Elisa Martró, José Ramón Santos, Marta Massanella

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A codon usage-based approach for the stratification of Influenza A across recent spillovers by Tommaso Alfonsi, Matteo Chiara, Anna Bernasconi

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Discovery of novel mycoviruses from fungi associated with mango leaf spots by Qihua Wang, Mengyi Chen, Yanling Xie

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Optimized Directed Virus Evolution to Accelerate the Generation of Oncolytic Coxsackievirus B3 Adapted to Resistant Colorectal Cancer Cells by Leslie Elsner, Babette Dieringer, Anja Geisler, Maxim Girod, Sophie Van Linthout, Jens Kurreck, Henry Fechner

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Structural basis of host ligand specificity change of GII porcine noroviruses from their closely related GII human noroviruses by Yang Yang, Ming Xia, Leyi Wang, Sahaana Arumugam, Yajing Wang, Xianjin Ou, Chenlong Wang, Xi Jiang, Ming Tan, Yutao Chen, Xuemei Li

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Conserved recombination patterns across hepatitis B genotypes: a retrospective study by Derek Tshiabuila, James E. San, Eduan Wilkinson, Graeme Dor, Houriiyah Tegally, Tongai G. Maponga, Marion Delphin, Philippa C. Matthews, Darren P. Martin, Cheryl Baxter, Tulio de Oliveira

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An Update on RNA Virus Discovery: Current Challenges and Future Perspectives by Humberto Debat, Nicolas Bejerman

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Epidemiological characteristics and precise prophylaxis and control of primary liver cancer in China by CAO Guangwen

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Adaptation of the Vaccine Prophylaxis Strategy to Variants of the SARS-CoV-2 Virus by Sofia M. Gulova, Uliana S. Veselkina, Irina V. Astrakhantseva

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Dataset of SARS-CoV-2 spike protein receptor binding domain variants in complex with antigen-binding fragments targeting COVID-19 vaccine-referenced variantsModel Archive by Ferdinando Spagnolo, Florigio Lista, Claudia Curcio

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Intersegment Recombination During Influenza A Virus Replication Gives Rise to a Novel Class of Defective Viral Genomes by Soraya Anisi, George Noble, Rory Williams, Jack Hales, Hannah E. Bridgewater, Andrew Easton, William Collier, Phillip Gould

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Phylogenetic and Mutation Analysis of Hemagglutinin Gene from Highly Pathogenic Avian Influenza Virus H5 Clade 2.3.4.4b in South America by Alfredo Bruno, Domenica de Mora, Miguel Angel Garcia-Bereguiain, Juan Cristina

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Deletion viral genome diversity among bovine viral diarrhea virus (BVDV) 1a and 1b strains by David J. Holthausen, Darrell O. Bayles, John D. Neill, Rohana P. Dassanayake, Shollie M. Falkenberg, Harish Menghwar, Eduardo Casas

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