The systemic evolutionary theory of the origin of cancer (SETOC): an update by Antonio Mazzocca, Giovanni Ferraro, Giovanni Misciagna

Subjects: Get full text

The relative biologic effectiveness versus linear energy transfercurve as an output-input relation for linear cellular systems by Quoc T. Luu, Paul DuChateau

Subjects: Get full text

A multi-omics strategy to understand PASC through the RECOVER cohorts: a paradigm for a systems biology approach to the study of chronic conditions by Jun Sun, Masanori Aikawa, Hassan Ashktorab, Noam D. Beckmann, Noam D. Beckmann, Michael L. Enger, Joaquin M. Espinosa, Xiaowu Gai, Xiaowu Gai, Benjamin D. Horne, Benjamin D. Horne, Paul Keim, Paul Keim, Paul Keim, Jessica Lasky-Su, Rebecca Letts, Cheryl L. Maier, Meisha Mandal, Lauren Nichols, Nadia R. Roan, Nadia R. Roan, Mark W. Russell, Jacqueline Rutter, George R. Saade, George R. Saade, Kumar Sharma, Kumar Sharma, Stephanie Shiau, Stephen N. Thibodeau, Samuel Yang, Lucio Miele, NIH Researching COVID to Enhance Recovery (RECOVER) Consortium

Subjects: Get full text

The TB27 Transcriptomic Model for Predicting Mycobacterium tuberculosis Culture Conversion by Maja Reimann, Korkut Avsar, Andrew DiNardo, Torsten Goldmann, Gunar Günther, Michael Hoelscher, Elmira Ibraim, Barbara Kalsdorf, Stefan Kaufmann, Niklas Köhler, Anna Mandalakas, Florian Maurer, Marius Müller, Dörte Nitschkowski, Ioana Olaru, Cristina Popa, Andrea Rachow, Thierry Rolling, Helmut Salzer, Patricia Sanchez-Carballo, Maren Schuhmann, Dagmar Schaub, Victor Spinu, Elena Terhalle, Markus Unnewehr, Nika Zielinski, Jan Heyckendorf, Christoph Lange

Subjects: Get full text

Editorial: Systems biology approaches to psychiatric and psychological disorders: unraveling the complexities by Ruoting Yang, Bernie J. Daigle, Ryan Rampersaud, Katharina Schultebraucks

Subjects: “…systems biology…”
Get full text

Protocol for capturing a full transcriptome from single preimplantation embryos using So-Smart-seq by Chunyao Wei, Jeannie T. Lee

Subjects: Get full text

Protocol for fecal microbiota transplantation: A microaerophilic approach for mice housed in a specific pathogen-free facility by Shari Wouters, Hugo Moors, Mieke Verslegers, Natalie Leys, Surbhi Malhotra-Kumar, Samir Kumar-Singh, Mohamed Mysara

Subjects: Get full text

Editorial: Towards the embedding of artificial intelligence into synthetic organisms: engineering intelligence in microorganisms by Martín Eduardo Gutiérrez, Rafael Lahoz-Beltrá, Alberto J. Donayre-Torres

Subjects: “…synthetic and systems biology…”
Get full text

A guide for developing comprehensive systems biology maps of disease mechanisms: planning, construction and maintenance by Alexander Mazein, Marcio Luis Acencio, Irina Balaur, Adrien Rougny, Danielle Welter, Anna Niarakis, Anna Niarakis, Diana Ramirez Ardila, Ugur Dogrusoz, Piotr Gawron, Venkata Satagopam, Venkata Satagopam, Wei Gu, Wei Gu, Andreas Kremer, Reinhard Schneider, Reinhard Schneider, Marek Ostaszewski, Marek Ostaszewski

Subjects: Get full text

CyberUnits Bricks: An Implementation Study of a Class Library for Simulating Nonlinear Biological Feedback Loops by Johannes W. Dietrich, Nina Siegmar, Jonas R. Hojjati, Oliver Gardt, Bernhard O. Boehm

Subjects: Get full text

Integrative deep immune profiling of the elderly reveals systems-level signatures of aging, sex, smoking, and clinical traitsResearch in context by Lennart Riemann, Rodrigo Gutierrez, Ivan Odak, Joana Barros-Martins, Lennart M. Roesner, Ximena Leon Lara, Christine Falk, Thomas F. Schulz, Gesine Hansen, Thomas Werfel, Reinhold Förster, Berislav Bošnjak, Felix Jenniches, Norman Klopp, Till Robin Lesker, Martin Stangel

Subjects: “…Systems biology…”
Get full text

Stress-sensitive neurosignalling in depression: an integrated network biology approach to candidate gene selection for genetic association analysis by J. Anke M. van Eekelen, Justine A. Ellis, Craig A. Olsson, Craig E. Pennell, Jeff Craig, Richard Saffery, Eugen Mattes

Subjects: “…systems biology, emotion, behaviour, hypothalamic-pituitary-adrenal axis, the Raine Study…”
Get full text

Ontologies in modelling and analysing of big genetic data by N. L. Podkolodnyy, O. A. Podkolodnaya, V. A. Ivanisenko, M. A. Marchenko

Subjects: Get full text

Targeting ferroptosis in prostate cancer management: molecular mechanisms, multidisciplinary strategies and translational perspectives by Hubo Yang, Xuefeng Zhang, Zongming Jia, He Wang, Jixiang Wu, Xuedong Wei, Yuhua Huang, Wenying Yan, Yuxin Lin

Subjects: Get full text

Parameter space exploration within dynamic simulations of signaling networks by Cristina De Ambrosi, Annalisa Barla, Lorenzo Tortolina, Nicoletta Castagnino, Raffaele Pesenti, Alessandro Verri, Alberto Ballestrero, Franco Patrone, Silvio Parodi

Subjects: Get full text

A practical guide to FAIR data management in the age of multi-OMICS and AI by Douaa Mugahid, Jared Lyon, Charlie Demurjian, Nathan Eolin, Charlie Whittaker, Mark Godek, Douglas Lauffenburger, Sarah Fortune, Stuart Levine

Subjects: Get full text

Revealing systematic changes in the transcriptome during the transition from exponential growth to stationary phase by Hyun Gyu Lim, Ye Gao, Kevin Rychel, Cameron Lamoureux, Xuwen A. Lou, Bernhard O. Palsson

Subjects: Get full text

When HSFs bring the heat—mapping the transcriptional circuitries of HSF-type regulators in Candida albicans by Sadri Znaidi

Subjects: Get full text

Improving neuroendocrine tumor treatments with mathematical modeling: lessons from other endocrine cancers by John Metzcar, Rachael Guenter, Yafei Wang, Kimberly M Baker, Kate E Lines

Subjects: Get full text