Flexible analysis of spatial transcriptomics data (FAST): a deconvolution approach by Meng Zhang, Joel Parker, Lingling An, Yiwen Liu, Xiaoxiao Sun

Subjects: “…Spatial transcriptomics…”
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A spatial transcriptomic atlas of the host response to oropharyngeal candidiasis by Sunna Nabeela, Hayden McSwiggin, Rubens Daniel Miserani Magalhaes, Eliciane Cevolani Mattos, Mohammad Mannan, John T. Dillon, Ashley Barbarino, Eman G. Youssef, Shakti Singh, Wei Yan, Ashraf S. Ibrahim, Heather R. Conti, Priya Uppuluri

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Integrated multi-omics analysis reveals the functional and prognostic significance of lactylation-related gene PRDX1 in breast cancer by Qinqing Wu, Qinqing Wu, Heng Cao, Jiangdong Jin, Dongxu Ma, Yixiao Niu, Yixiao Niu, Yanping Yu, Yanping Yu, Xiang Wang, Yiqin Xia

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Spatial transcriptomics reveal high T cell and monocyte status as predictive and prognostic markers in pancreatic cancer by Yeon Bi Han, Sejoon Lee, Jin-Ok Lee, Se In Jeong, Ki Rim Lee, Soomin Ahn, Kwangrok Jung, Jong-Chan Lee, Yoo-Seok Yoon, Jin-Hyeok Hwang, Ho-Seong Han, Hee Young Na, Jaihwan Kim

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Mapping Small Extracellular Vesicle Secretion Potential in Healthy Human Gingiva Using Spatial Transcriptomics by Blanka Maria Borowiec, Małgorzata Blatkiewicz, Marta Dyszkiewicz-Konwińska, Dorota Bukowska, Bartosz Kempisty, Marcin Ruciński, Michał Nowicki, Joanna Budna-Tukan

Subjects: “…spatial transcriptomics…”
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Integrated analysis of single-cell RNA-seq and spatial transcriptomics to identify the lactylation-related protein TUBB2A as a potential biomarker for glioblastoma in cancer cells... by Yifan Xu, Chonghui Zhang, Jinpeng Wu, Pin Guo, Nan Jiang, Chao Wang, Yugong Feng

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A novel cancer-associated membrane signature predicts prognosis and therapeutic response for lung adenocarcinoma by Biao Tu, Jun Wu, Wei Zhang, Haitao Tang, Tenghui Dai, Bingfeng Xie

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Integrated analysis of single-cell, spatial and bulk RNA-sequencing identifies a cell-death signature for predicting the outcomes of head and neck cancer by Yue Pan, Lei Fei, Shihua Wang, Hua Chen, Changqing Jiang, Hong Li, Changsong Wang, Yao Yang, Qinggao Zhang, Yongwen Chen

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Spatial visualization provides insight into immune modulation by an L-DBF vaccine formulation against Shigella by Ti Lu, Skyler T. Kramer, Mary A. York, Mst Nusrat Zahan, Debaki R. Howlader, Zackary K. Dietz, Sean K. Whittier, Nathan J. Bivens, Alexander Jurkevich, Lyndon M. Coghill, Lyndon M. Coghill, William D. Picking, Wendy L. Picking

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Neurogenesis drives hippocampal formation-wide spatial transcription alterations in health and Alzheimer's disease by Zachery D. Morrissey, Zachery D. Morrissey, Zachery D. Morrissey, Pavan Kumar, Trongha X. Phan, Mark Maienschein-Cline, Alex Leow, Alex Leow, Orly Lazarov

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Identification of Prognostic Biomarkers of Ovarian High-Grade Serous Carcinoma: A Preliminary Study Using Spatial Transcriptome Analysis and Multispectral Imaging by Haeyoun Kang, Je-Gun Joung, Hyun Park, Min Chul Choi, Doohyun Koh, Ju-Yeon Jeong, Jimin Lee, Sook-Young Kim, Daun Jung, Sohyun Hwang, Hee Jung An

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Current state and future prospects of spatial biology in colorectal cancer by Francisco G. Carranza, Fernando C. Diaz, Maria Ninova, Enrique Velazquez-Villarreal, Enrique Velazquez-Villarreal

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Multidimensional transcriptomics based to illuminate the mechanisms of taurine metabolism in immune resistance of pancreatic cancer by Zongshuai Qin, Zongshuai Qin, Guixiang Huang, Guixiang Huang, Jian Xu, Jian Xu, Lujuan Pan, Chaojun Lan, Chaojun Lan, Yuhuan Yang, Yuhuan Yang, Yixia Yin, Yueqiu Qin, Yueqiu Qin, Yueqiu Qin

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Spatial Transcriptomics in Inflammatory Skin Diseases Using GeoMx Digital Spatial Profiling: A Practical Guide for Applications in Dermatology by Christina Cho, Nazgol-Sadat Haddadi, Michal Kidacki, Gavitt A. Woodard, Saeed Shakiba, Ümmügülsüm Yıldız-Altay, Jillian M. Richmond, Matthew D. Vesely

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Single-cell sequencing combined with spatial transcriptomics reveals the characteristics of follicle-targeted inflammation patterns in primary cicatricial alopecia by Qitao Chen, Yuqian Li, Qilin Zhu, Zhongming Li, Guanghui Shao, Yanjun Liu, Peixuan Jiang, Qiuwei Tao, Lili Shen, Jing Zhu, Linwei Wei, Yanhua Li, Xufeng Du

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Spatial gene regulatory networks driving cell state transitions during human liver disease by Nigel L Hammond, Syed Murtuza Baker, Sokratia Georgaka, Ali Al-Anbaki, Elliot Jokl, Kara Simpson, Rosa Sanchez-Alvarez, Varinder S Athwal, Huw Purssell, Ajith K Siriwardena, Harry V M Spiers, Mike J Dixon, Leoma D Bere, Adam P Jones, Michael J Haley, Kevin N Couper, Nicoletta Bobola, Andrew D Sharrocks, Neil A Hanley, Magnus Rattray, Karen Piper Hanley

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Multi-omics analysis identifies DLX4 as a novel biomarker for diagnosis, prognosis, and immune infiltration: from pan-cancer to renal cancer by Zengshun Kou, Shuaizhi Zhu, Jiaxi Zhu, Shufei Wang, Yu Zheng, Shengjie Zhou, Zi’ang Si, Hai Zhu

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Spatiotemporal Transcriptomic Profiling Reveals the Dynamic Immunological Landscape of Alveolar Echinococcosis by Zhihua Ou, Li Li, Peidi Ren, Ting‐Ting Zhou, Fan He, Jialing Chen, Huimin Cai, Xiumin Han, Yao‐Dong Wu, Jiandong Li, Xiu‐Rong Li, Qiming Tan, Wenhui Li, Qi Chen, Nian‐Zhang Zhang, Xiuju He, Wei‐Gang Chen, Yanping Zhao, Jiwen Sun, Qian Zhang, Yan‐Tao Wu, Yingan Liang, Jie You, Guohai Hu, Xue‐Qi Tian, Sha Liao, Bao‐Quan Fu, Ao Chen, Xue‐Peng Cai, Huanming Yang, Jian Wang, Xin Jin, Xun Xu, Wan‐Zhong Jia, Junhua Li, Hong‐Bin Yan

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Spatial gene expression profiling identifies prognostic features of residual tumors after neoadjuvant chemotherapy in triple-negative breast cancer by Hye Sung Won, Yong-Seok Kim, Kyung Jin Seo, Sun-Young Jun, Der Sheng Sun, Mihong Choi, Jung-Sook Yoon, Jae Ho Byun

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APPLICATIONS OF TRANSCRIPTOMICS METHODS IN BREAST CANCER by Yeşim Gökmen Polar

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