VMGP: A unified variational auto-encoder based multi-task model for multi-phenotype, multi-environment, and cross-population genomic selection in plants by Xiangyu Zhao, Fuzhen Sun, Jinlong Li, Dongfeng Zhang, Qiusi Zhang, Zhongqiang Liu, Changwei Tan, Hongxiang Ma, Kaiyi Wang

“…The VMGP framework, with its simplicity, stable predictive prowess, and open-source code, is exceptionally well-suited for broad dissemination within plant breeding programs. …”
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VMDU-net: a dual encoder multi-scale fusion network for polyp segmentation with Vision Mamba and Cross-Shape Transformer integration by Peng Li, Jianhua Ding, Chia S. Lim

“…Its strong performance across multiple datasets highlights its potential for practical clinical application in early colorectal cancer prevention.Code availabilityThe source code is publicly available at: https://github.com/sulayman-lee0212/VMDUNet/tree/4a8b95804178511fa5798af4a7d98fd6e6b1ebf7.…”
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HD-6mAPred: a hybrid deep learning approach for accurate prediction of N6-methyladenine sites in plant species by Huimin Li, Wei Gao, Yi Tang, Xiaotian Guo

“…Furthermore, HD-6mAPred not only improves the accuracy of 6mA site prediction, but also shows excellent generalization capability across species. The source code utilized in this study is publicly accessible at https://doi.org/10.5281/zenodo.15355131.…”
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Distortion correction of diffusion weighted MRI without reverse phase-encoding scans or field-maps. by Kurt G Schilling, Justin Blaber, Colin Hansen, Leon Cai, Baxter Rogers, Adam W Anderson, Seth Smith, Praitayini Kanakaraj, Tonia Rex, Susan M Resnick, Andrea T Shafer, Laurie E Cutting, Neil Woodward, David Zald, Bennett A Landman

“…The method is available as a Singularity container, source code, and an executable trained model to facilitate evaluation.…”
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Parallel boosting neural network with mutual information for day-ahead solar irradiance forecasting by Ubaid Ahmed, Anzar Mahmood, Ahsan Raza Khan, Levin Kuhlmann, Khurram Saleem Alimgeer, Sohail Razzaq, Imran Aziz, Amin Hammad

“…Furthermore, a literature comparison of the PBNN is also performed for robustness analysis. Source code and datasets are available at https://github.com/Ubaid014/Parallel-Boosting-Neural-Network/tree/main…”
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IECO: an improved educational competition optimizer for state-of-the-art engineering optimization by Xiaojie Tang, Junbo Jacob Lian, Ling Ma, Xincan Wu, Rui Zhong, Yujun Zhang, Huiling Chen

“…These findings position IECO as a new state-of-the-art optimizer in single-objective optimization. The source code for IECO can be accessed at https://github.com/junbolian/IECO .…”
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RMDNet: RNA-aware dung beetle optimization-based multi-branch integration network for RNA–protein binding sites prediction by Jiangbo Zhang, Yunhui Peng, Feifei Cui, Zilong Zhang, Shankai Yan, Qingchen Zhang

“…It has broad potential in disease mechanism research and therapeutic target discovery. The source code is available https://github.com/cskyan/RMDNet .…”
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Transferring enhanced material knowledge via image quality enhancement and feature distillation for pavement condition identification by Zejiu Wu, Yuxing Zou, Boyang Liu, Zhijie Li, Donghong Ji, Hongbin Zhang

“…This study provides a novel insight into pavement condition identification. The source code of IQEFD will be made available at https://github.com/rainzyx/IQEFD .…”
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A Multi-Goal Particle Swarm Optimizer for Test Case Prioritization by Muhammad Nazir, Arif Mehmood, Waqar Aslam, Yongwan Park, Gyu Sang Choi, Imran Ashraf

“…Since it is very difficult to run all the updated source code every time, test case prioritization is needed to decrease the fee of regression testing. …”
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A progressive attention-based cross-modal fusion network for cardiovascular disease detection using synchronized electrocardiogram and phonocardiogram signals by Wei Peng Li, Joon Huang Chuah, Guo Jeng Tan, Chengyu Liu, Hua-Nong Ting

“…Notably, PACFNet not only excels in multi-modal settings but also maintains robust diagnostic capabilities even with missing modalities, underscoring its practical effectiveness and reliability. The source code is publicly available on Zenodo (https://zenodo.org/records/15450169).…”
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EMD-based local matching for occluded person re-identification by Hoang-Anh Nguyen, Thuy-Binh Nguyen, Hong-Quan Nguyen, Thi-Lan Le

“…These results underscore the robustness and efficacy of our approach. Our source code is made available at: https://github.com/anhnhust/emd-person-reid.…”
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Metric-based defect prediction from class diagram by Batnyam Battulga, Lkhamrolom Tsoodol, Enkhzol Dovdon, Naranchimeg Bold, Oyun-Erdene Namsrai

“…In the literature, various approaches such as machine learning (ML) and deep learning (DL), have been proposed and proven effective in detecting defects in source code during the implementation or testing phases of the software development life cycle (SDLC). …”
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Region-based U-nets for fast, accurate, and scalable deep brain segmentation: Application to Parkinson Plus Syndromes by Mengyu Li, Magnús Magnússon, Ingibjörg Kristjánsdóttir, Sigrún Helga Lund, Thilo van Eimeren, Lotta M. Ellingsen

“…Furthermore, our method outperforms these methods by reducing training time from several days to a few hours while providing a processing time of less than a second per subject. The source code and trained model will be made publicly available on GitHub.…”
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Infrared and visible image fusion network based on multistage progressive injection by Kaixuan Chang, Jianhua Huang, Xiyan Sun, Jian Luo, Shitao Bao, Huansheng Huang

“…Finally, we apply fusion methods to object detection scenarios, and the results show that MPIFusion exhibits significant superiority in such scenarios, providing more robust and reliable image support. The source code is available at https://github.com/Kaixuan-Chang/MPIFusion .…”
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Conformal Prediction for Uncertainty Quantification and Reliable HER2 Status Classification in Breast Cancer IHC Images by Surayuth Pintawong, Shanop Shuangshoti, Tikamporn Jitpasutham, Somruethai Shuangshoti, Kulachet Wiwatwarayos, Thananop Kobchaisawat, Thanarat H. Chalidabhongse

“…This selective prediction approach represents a practical step toward reliable automated HER2 assessment by focusing on high-confidence predictions. The source code of our implementation is available at: <uri>https://github.com/Surayuth/her2cp.git</uri>.…”
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A Bayesian phase 2 model based adaptive design to optimise antivenom dosing: Application to a dose-finding trial for a novel Russell's viper antivenom in Myanmar. by James A Watson, Thomas Lamb, Jane Holmes, David A Warrell, Khin Thida Thwin, Zaw Lynn Aung, Min Zaw Oo, Myat Thet Nwe, Frank Smithuis, Elizabeth A Ashley

“…The model based design can identify an optimal dose after fewer patients relative to the rule based design. Open source code for the simulations is made available in order to determine adequate sample sizes for future adaptive snakebite trials. …”
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Viability Study of SYCL as a Unified Programming Model for Heterogeneous Systems Based on GPUs in Bioinformatics by Manuel Costanzo

“…This standard facilitates the development of portable applications that can efficiently leverage the capabilities of different hardware devices, such as NVIDIA, Intel, and AMD GPUs, without needing significant modifications to the source code. Therefore, this thesis set out as its general objective to evaluate the feasibility of SYCL as a unified, portable, and efficient heterogeneous programming model for the design and development of computationally demanding applications on heterogeneous GPU-based systems, specifically in the field of bioinformatics. …”
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Informed-Learning-Guided Visual Question Answering Model of Crop Disease by Yunpeng Zhao, Shansong Wang, Qingtian Zeng, Weijian Ni, Hua Duan, Nengfu Xie, Fengjin Xiao

“…These experiments demonstrate that ILCD exhibits the highest level of accuracy, performance, and value in the field of agriculture. The source codes can be accessed at https://github.com/SdustZYP/ILCD-master/tree/main.…”
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ELTrack: Events-Language Description for Visual Object Tracking by Mohamad Alansari, Khaled Alnuaimi, Sara Alansari, Sajid Javed

“…Extensive experiments demonstrate that ELTrack achieves significantly better performance across a variety of publicly available VOT datasets. The source code of the ELTrack is publicly available at: <uri>https://github.com/HamadYA/ELTrack-Correlating-Events-and-Language-for-Visual-Tracking</uri>.…”
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ACTION: Augmentation and computation toolbox for brain network analysis with functional MRI by Yuqi Fang, Junhao Zhang, Linmin Wang, Qianqian Wang, Mingxia Liu

“…The software, along with its source code and manual, can be accessed online.…”
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