Integrating non-linear radon transformation for diabetic retinopathy grading by Farida Mohsen, Samir Belhaouari, Zubair Shah

“…These results demonstrate RadFuse’s capacity to capture complex non-linear features, advancing diabetic retinopathy classification and promoting the integration of advanced mathematical transforms in medical image analysis. The source code will be available at https://github.com/Farida-Ali/RadEx-Transform/tree/main .…”
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Neurovision: A deep learning driven web application for brain tumour detection using weight-aware decision approach by Thota Rishik Sai Santhosh, Sachi Nandan Mohanty, Nihar Ranjan Pradhan, Tauseef Khan, Morched Derbali

“…The entire framework is seamlessly integrated into an end-to-end web-application for user convenience. The source code, dataset and other particulars are publicly released at https://github.com/SaiSanthosh1508/Brain-Tumour-Image-classification-app [Rishik Sai Santhosh, “Brain Tumour Image Classification Application,” https://github.com/SaiSanthosh1508/Brain-Tumour-Image-classification-app ] for academic, research and other non-commercial usage.…”
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KF-NIPT: K-mer and fetal fraction-based estimation of chromosomal anomaly from NIPT data by Dongin Kim, Ji Yeon Sohn, Jin Hee Cho, Ji-Hye Choi, Gwi-young Oh, Hyun Goo Woo

“…KF-NIPT is implemented in the R and Python environment. The source code is available at https://github.com/eastbrain/KF-NIPT . …”
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Fast and accurate imputation of genotypes from noisy low-coverage sequencing data in bi-parental populations. by Cécile Triay, Alice Boizet, Christopher Fragoso, Anestis Gkanogiannis, Jean-François Rami, Mathias Lorieux

“…<h4>Availability</h4>NOISYmputer and its source code are available as a multiplatform (Linux, macOS, Windows) Java executable at the URL https://gitlab.cirad.fr/noisymputer/noisymputerstandalone/-/tree/1.0.0-RELEASE?…”
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Deepmol: an automated machine and deep learning framework for computational chemistry by João Correia, João Capela, Miguel Rocha

“…As one of the first AutoML tools specifically developed for the computational chemistry domain, DeepMol stands out with its open-source code, in-depth tutorials, detailed documentation, and examples of real-world applications, all available at https://github.com/BioSystemsUM/DeepMol and https://deepmol.readthedocs.io/en/latest/ . …”
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Effects of Airless Bodies’ Regolith Structures and of the Solar Wind’s Properties on the Backscattered Energetic Neutral Atoms Flux by S. Verkercke, J.-Y. Chaufray, F. Leblanc, E. M. Bringa, D. Tramontina, L. Morrissey, A. Woodson

“…By considering spherical silica grains, the lunar regolith’s structure is described using the open-source code Large-scale Atomic/Molecular Massively Parallel Simulator (or LAMMPS), which allows a realistic description of grain-on-grain contacts. …”
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SoftGrasp: Adaptive grasping for dexterous hand based on multimodal imitation learning by Yihong Li, Ce Guo, Junkai Ren, Bailiang Chen, Chuang Cheng, Hui Zhang, Huimin Lu

“…These capabilities result in a 98% success rate in real-world experiments, achieving dexterous and stable grasping. Source code and demonstration videos are available at https://github.com/nubot-nudt/SoftGrasp.…”
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Pasithea-1: An Energy-Efficient Sequential Reconfigurable Array With CPU-Like Programmability by Tobias Kaiser, Esther Gottschalk, Kai Biethahn, Friedel Gerfers

“…Combined with dedicated, uniform processing elements, this enables fast compilation from C source code (1.4 s mean compile time). Demonstrator measurements reveal energy efficiency of up to 601 int32 MIPS/mW at 0.59V and performance of up to 148 MIPS at 0.90 V. …”
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Blockchain and NFT-Based Solution for Genomic Data Management, Sharing, and Monetization by Ahmad Musamih, Khaled Salah, Raja Jayaraman, Samer Ellaham, Mohammed Omar, Ibrar Yaqoob

“…We provide guidelines for the generalizability of our solution beyond genomics and outline the challenges and limitations of the proposed solution. We make the source code of the smart contracts publicly available on GitHub.…”
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AnVILWorkflow: A runnable workflow package for Cloud-implemented bioinformatics analysis pipelines [version 1; peer review: 2 approved] by Sean Davis, Marcel Ramos, Michael C. Schatz, Kai Gravel-Pucillo, Levi Waldron, Sehyun Oh, Martin Morgan, Vincent Carey

“…This package is distributed through the Bioconductor project (https://bioconductor.org/packages/AnVILWorkflow), and the source code is available through GitHub (https://github.com/shbrief/AnVILWorkflow).…”
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PINNing cerebral blood flow: analysis of perfusion MRI in infants using physics-informed neural networks by Christoforos Galazis, Christoforos Galazis, Ching-En Chiu, Ching-En Chiu, Tomoki Arichi, Anil A. Bharath, Anil A. Bharath, Marta Varela, Marta Varela

“…Frameworks like SUPINN have the potential to advance our understanding of the complex cardio-brain network physiology, aiding in the detection and management of diseases. Source code is provided at: https://github.com/cgalaz01/supinn.…”
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Real-Time FTM-Based Victim Positioning System Using Heterogeneous Robots in Remote and Outdoor Scenarios by Juan Bravo-Arrabal, Carlos Simon Alvarez-Merino, Manuel Toscano-Moreno, Javier Seron-Barba, J. J. Fernandez-Lozano, Jose Antonio Gomez-Ruiz, Emil J. Khatib, Raquel Barco, Alfonso Garcia-Cerezo

“…The complete system, including source code, dataset, and a containerized environment, is openly available to support reproducibility and further research, highlighting the potential of robotic and wireless technologies to enhance disaster response through accurate, real-time localization in complex environments.…”
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Transfer Learning for Photovoltaic Power Forecasting Across Regions Using Large-Scale Datasets by Seongho Bak, Sowon Choi, Donguk Yang, Doyoon Kim, Heeseon Rho, Kyoobin Lee

“…These findings offer a robust approach for cross-continental knowledge transfer in renewable energy forecasting, particularly benefiting regions with limited historical data or newly installed systems. The source code is available on <uri>https://github.com/gist-ailab/transfer-learning-PV-forecasting</uri>…”
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Taming Mambas for 3D Medical Image Segmentation by Luca Lumetti, Vittorio Pipoli, Kevin Marchesini, Elisa Ficarra, Costantino Grana, Federico Bolelli

“…Additionally, we address the primary limitations of existing Mamba-based architectures by proposing alternative architectural designs, hence improving segmentation performances. The source code is publicly available to ensure reproducibility and facilitate further research: <uri>https://github.com/LucaLumetti/TamingMambas</uri>…”
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Multi-Classification Refactoring Framework Using Hopfield Neural Network for Sustainable Software Development by Abdullah Almogahed, Hairulnizam Mahdin, Yeong Hyeon Gu, Mohammed A. Al-Masni, Shehab Abdulhabib Alzaeemi, Mazni Omar, Abdulwadood Alawadhi, Samera Obaid Barraood, Abdul Rehman Gilal, Adnan Ameen Bakather

“…Adopting high-quality source code is the ultimate way through which software evolution can be ensured as sustainable. …”
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TCI-Net: Structural Feature Enhancement and Multi-Level Constrained Network for Reliable Thin Crack Identification on Concrete Surfaces by Shiming Li, Fengtao Yan, Zhijie Li, Qingfeng Hu, Shiqian Xu, Shilian Liu

“…The results demonstrate that the proposed approach accurately identifies fine cracks and exhibits enhanced robustness against challenging conditions such as illumination variations and environmental interference. The source code is publicly available at <uri>https://github.com/SmileLeeCN/ThinCrackIdentification</uri>.…”
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An Opposition-Based Great Wall Construction Metaheuristic Algorithm With Gaussian Mutation for Feature Selection by Farouq Zitouni, Abdulaziz S. Almazyad, Guojiang Xiong, Ali Wagdy Mohamed, Saad Harous

“…The resulting mean ranks and p-values unequivocally demonstrate the superior efficacy of the proposed algorithm in addressing the feature selection problem. The Matlab source code for the proposed approach is available for access via the link &#x201C;<uri>https://www.mathworks.com/matlabcentral/fileexchange/159728-an-opposition-based-gwca-for-thefs-problem</uri>&#x201D;.…”
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HyPepTox-Fuse: An interpretable hybrid framework for accurate peptide toxicity prediction fusing protein language model-based embeddings with conventional descriptors by Duong Thanh Tran, Nhat Truong Pham, Nguyen Doan Hieu Nguyen, Leyi Wei, Balachandran Manavalan

“…Furthermore, the HyPepTox-Fuse server is freely accessible at https://balalab-skku.org/HyPepTox-Fuse/ and the source code is publicly available at https://github.com/cbbl-skku-org/HyPepTox-Fuse/. …”
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Facilitating bootstrapped and rarefaction-based microbiome diversity analysis with q2-boots [version 1; peer review: 1 approved, 2 approved with reservations] by J Gregory Caporaso, Evan Bolyen, Anthony Simard, Andrew Manley, Jeff Meilander, Chloe Herman, Elizabeth Gehret, Isaiah Raspet

“…Conclusions A challenge of this work was deciding how to integrate distance matrices that were computed on n resampled feature tables, as a simple average of pairwise distances (median or mean) does not account for the structure of distance matrices. q2-boots provides three options, and we show here that the results of these approaches are highly correlated. q2-boots is free and open source. Source code can be found at https://github.com/caporaso-lab/q2-boots; installation instructions and a tutorial can be found in the project’s documentation at https://q2-boots.readthedocs.io.…”
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Toward AI-Augmented Formal Verification: A Preliminary Investigation of ENGRU and Its Challenges by Chanon Dechsupa, Teerapong Panboonyuen, Wiwat Vatanawood, Praisan Padungweang, Chakchai So-In

“…Experimental results demonstrate that ENGRU&#x2019;s ability achieves high accuracy and efficiency in goal state predictions. The source code for ENGRU is available at (<uri>https://github.com/kaopanboonyuen/ENGRU</uri>).…”
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