MicroEcoTools: An R package for comprehensive theoretical microbial ecology analysis by Soheil A. Neshat, Ezequiel Santillan, Stefan Wuertz

“…This R package, along with its source code, can be freely accessed on GitHub at https://www.github.com/Soheil‐A‐Neshat/MicroEcoTools.…”
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A benchmark study of compression software for human short-read sequence data by Raphael O. Betschart, Felix Thalén, Stefan Blankenberg, Martin Zoche, Tanja Zeller, Andreas Ziegler

“…Although Genozip requires an annual license, its source code is freely available, ensuring sustainability. …”
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NetraAadhaar: A Deep Learning-Driven Aadhaar Verification Platform for the Aid of Visually Impaired by Aditya Patil, Tauseef Khan, Ayatullah Faruk Mollah

“…NetraAadhaar empowers visually impaired users to verify their Aadhaar cards independently, reducing reliance on others and mitigating risks of identity fraud. The source code, dataset and developed application are publicly available for academic and research purposes at <uri>https://github.com/Adinp1213/NetraAadhar</uri>.…”
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A competitive-collaborative nonnegative representation method and its application for face recognition in smart campus by Tingting Guo, Ziqi Li, Jun Sun, Yonghong Zhang, Qingfeng Xia, Ke Ren

“…Extensive comparative experiments conducted on publicly available face datasets validate the effectiveness of the proposed model, consistently demonstrating its competitive performance. Habitually, the source code will be made available on the author’s profile page at https://github.com/li-zi-qi/CCNR .…”
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‘gitana’ (phyloGenetic Imaging Tool for Adjusting Nodes and other Arrangements), a tool for plotting phylogenetic trees into ready-to-publish figures by Cristina Galisteo, Rafael R. de la Haba

“…The users’ manual and source code are freely available at https://github.com/cristinagalisteo/gitana .…”
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A multi-domain dual-stream network for hyperspectral unmixing by Jiwei Hu, Tianhao Wang, Qiwen Jin, Chengli Peng, Quan Liu

“…Experimental results and ablation studies conducted on Synthetic and real datasets (Samson, Japser, Urban) outperform state-of-the-art techniques by more than 10% in terms of root mean squared error and spectral angle distance, illustrating the effectiveness and superiority of our proposed method. The source code is available at https://github.com/qiwenjjin/JAG-MdsNet.…”
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Class-balanced negative training sets for improving classifier model predictions of enhancer-promoter interactions by Osamu Maruyama, Tsukasa Koga

“…Further advanced methods in generating negative EPIs should further improve prediction accuracy. The source code is available at https://github.com/maruyama-lab-design/CBOEP2 .…”
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MagPySV: A Python Package for Processing and Denoising Geomagnetic Observatory Data by G. A. Cox, W. J. Brown, L. Billingham, R. Holme

“…However, current data processing methods rely on piecemeal closed‐source codes or are performed on an ad hoc basis, hampering efforts to reproduce data sets underlying published results. …”
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WDFS-DETR: A Transformer-based framework with multi-scale attention for small object detection in UAV Engineering Tasks by Jinjiang Liu, Yonghua Xie

“…The model also generalizes well to UAVDT and DOTA datasets, demonstrating its applicability to real-world UAV-based detection tasks in complex engineering settings. Source code is available at: https://github.com/liuliuliu2002/WDFS-DETR.…”
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CODE CLONE DETECTION WITH SELF-SUPERVISION ON DUAL GRAPHS by Chunguang Li, Adisorn Sirikham, Jessada Konpang, Yan Wang

“…These findings demonstrate that integrating complementary graph views affords a label-efficient and practically viable route to uncovering subtle semantic similarities in source code. …”
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Low Communication-Cost PSI Protocol for Unbalanced Two-Party Private Sets by Jingyu Ning, Zhenhua Tan, Kaibing Zhang, Weizhong Ye

“…Through implementation demonstration, we showcase that when the sizes of the two sets are 28 and 214, the communication cost of our protocol is only 3.3% of the state-of-the-art protocol and under 100 Kbps bandwidth, we achieve 1.46x speedup compared to the state-of-the-art protocol. Our source code is available on GitHub: https://github.com/TAN-OpenLab/Unbanlanced-PSI.…”
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Using Large Language Models for the Interpretation of Building Regulations by Stefan Fuchs, Michael Witbrock, Johannes Dimyadi, Robert Amor

“…Large language models (LLMs) such as the generative pre-trained transformers (GPT), GPT-3.5 and GPT-4, powering OpenAI’s ChatGPT, can generate logically coherent text and source code responding to user prompts. This capability could be used to automate the conversion of building regulations into a semantic and computable representation. …”
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Delving into Underwater Image Utility: Benchmark Dataset and Prediction Model by Jiapeng Liu, Yi Liu, Qiuping Jiang

“…The OD-UIUA dataset and the source code of our DeepUIUA model will be released.…”
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Detecting Malware C&C Communication Traffic Using Artificial Intelligence Techniques by Mohamed Ali Kazi

“…This prevalence was expedited by the fact that the Zeus source code was inadvertently released to the public in 2004, allowing malware developers to reproduce the Zeus banking malware and develop variants of this malware. …”
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A Common Language of Software Evolution in Repositories (CLOSER) by Jordan Garrity, David Cutting

“…Version Control Systems (VCSs) are used by development teams to manage the collaborative evolution of source code, and there are several widely used industry standard VCSs. …”
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An improved multi-objective particle swarm optimization algorithm for the design of foundation pit of rail transit upper cover project by Jinyan Shao, Yuan Lu, Yi Sun, Lei Zhao

“…The results show that MOIPSO not only performs well in multi-objective function testing but also proves highly competitive in solving real-world engineering problems. Note that the source codes of MOGWO are publicly available at https://au.mathworks.com/matlabcentral/fileexchange/177404-moipso-optimization-engineering-problem .…”
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ResCapsnet: a capsule network with CRAM and BiGRU for sound event detection by Bing Sun, Chenglong Liu, Shuguo Yang, Wenwu Wang, Yiduo Mei

“…It achieved F-scores of 62.1% and 75.9% on the Audio Tagging (AT) task, and 54.1% and 59.0% on the sound event detection (SED) task, respectively. The source codes are available at https://github.com/123sunbing/ResCapsnet.git .…”
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Model checking programs in process-oriented IEC 61131-3 Structured Text by Natalia O. Garanina, Sergey M. Staroletov, Vladimir E. Zyubin, Igor S. Anureev

“…The poST language is a promising process-oriented extension of the IEC 61131-3 Structured Text (ST) language designed to provide a conceptual consistency of the PLC source code with technological description of the process under control. …”
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Alquimia v1.0: a generic interface to biogeochemical codes – a tool for interoperable development, prototyping and benchmarking for multiphysics simulators by S. Molins, B. J. Andre, J. N. Johnson, J. N. Johnson, G. E. Hammond, B. N. Sulman, K. Lipnikov, M. S. Day, J. J. Beisman, D. Svyatsky, H. Deng, P. C. Lichtner, C. I. Steefel, J. D. Moulton

“…We describe the implementation in Alquimia of two widely used open-source codes that perform geochemical calculations: PFLOTRAN and CrunchFlow. …”
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AFHNet: Attention-Free Hybrid Network for Salient Object Detection in Underwater Images by Qian Tang, Zhen Wang, Xuqi Wang, Shan-Wen Zhang

“…These results highlight the potential of AFHNet to advance underwater vision applications and establish a new benchmark for salient object detection in challenging environments. The source code and models are available at <uri>https://github.com/darkseid-arch/Underwater-AFHNet</uri>…”
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