ARGContextProfiler: extracting and scoring the genomic contexts of antibiotic resistance genes using assembly graphs by Nazifa Ahmed Moumi, Shafayat Ahmed, Connor Brown, Amy Pruden, Liqing Zhang

“…ARGContextProfiler thus provides a powerful tool for uncovering the genomic context of ARGs in metagenomic sequencing data, which can be of value to both fundamental and applied research aimed at understanding and stemming the spread of AR. The source code of ARGContextProfiler is publicly available at GitHub.…”
Get full text

Low Communication-Cost PSI Protocol for Unbalanced Two-Party Private Sets by Jingyu Ning, Zhenhua Tan, Kaibing Zhang, Weizhong Ye

“…Through implementation demonstration, we showcase that when the sizes of the two sets are 28 and 214, the communication cost of our protocol is only 3.3% of the state-of-the-art protocol and under 100 Kbps bandwidth, we achieve 1.46x speedup compared to the state-of-the-art protocol. Our source code is available on GitHub: https://github.com/TAN-OpenLab/Unbanlanced-PSI.…”
Get full text

HPClas: A data‐driven approach for identifying halophilic proteins based on catBoost by Shantong Hu, Xiaoyu Wang, Zhikang Wang, Menghan Jiang, Shihui Wang, Wenya Wang, Jiangning Song, Guimin Zhang

“…Extensive in silico calculations were conducted on a large public dataset of 12,574 samples and HPClas achieved an area under the receiver operating characteristic curve (AUROC) of 0.844 on an independent test set of 200 samples. The source code and curated dataset of HPClas are publicly available at https://github.com/Showmake2/HPClas. …”
Get full text

“Version 1.4.0 – pyfao56: FAO-56 evapotranspiration in Python” by Kelly R. Thorp, Dinesh Gulati, Meetpal Kukal, Reagan Ames, Tyler Pokoski, Kendall C. DeJonge

“…Other minor edits included the addition of the Kling-Gupta efficiency as a goodness-of-fit statistic, error handling when the provided soil profile depth is shallower than the maximum rooting depth, and improved management of the model version number in the source code.…”
Get full text

Using Large Language Models for the Interpretation of Building Regulations by Stefan Fuchs, Michael Witbrock, Johannes Dimyadi, Robert Amor

“…Large language models (LLMs) such as the generative pre-trained transformers (GPT), GPT-3.5 and GPT-4, powering OpenAI’s ChatGPT, can generate logically coherent text and source code responding to user prompts. This capability could be used to automate the conversion of building regulations into a semantic and computable representation. …”
Get full text

Analytic Hierarchy Process for an Automated Evaluation of Learning Difficulties of Novice Programmers by Salvatore Venticinque, Alba Amato, Pietro Fusco, Francesco Palmieri

“…Novice programmers, beyond their problem-solving skills, often demonstrate difficulties in writing source code that is error-free. Behind the difficulties of mastering the syntax of a programming language and understanding the compiler messages, is often hidden a wrong comprehension of fundamental coding concepts. …”
Get full text

Delving into Underwater Image Utility: Benchmark Dataset and Prediction Model by Jiapeng Liu, Yi Liu, Qiuping Jiang

“…The OD-UIUA dataset and the source code of our DeepUIUA model will be released.…”
Get full text

Detecting Malware C&C Communication Traffic Using Artificial Intelligence Techniques by Mohamed Ali Kazi

“…This prevalence was expedited by the fact that the Zeus source code was inadvertently released to the public in 2004, allowing malware developers to reproduce the Zeus banking malware and develop variants of this malware. …”
Get full text

libBICOS – An Open Source GPU-Accelerated Library implementing BInary COrrespondence Search for 3D Reconstruction by C. Liebender, M. Bleier, A. Nüchter

“…By publishing this method as a freely available library, in both a CUDA and CPU implementation, we hope for others to quickly gain traction in this field. The source code with build instructions and command-line tooling is available at https://github.com/JMUWRobotics/libBICOS under the GNU LGPLv3.…”
Get full text

A Common Language of Software Evolution in Repositories (CLOSER) by Jordan Garrity, David Cutting

“…Version Control Systems (VCSs) are used by development teams to manage the collaborative evolution of source code, and there are several widely used industry standard VCSs. …”
Get full text

CSMA: A Standalone and ImageJ-Compatible Tool for Enhanced Wound Healing Assay Analysis by Tri Thanh Pham, Amina Sagymbayeva, Timur Elebessov, Zhadyra Onzhanova, Ferdinand Molnar

“…CSMA is available as a standalone and ImageJ-compatible tool with its source code at <uri>https://github.com/AminaSagymbayeva/CSMA_WoundHealing</uri>…”
Get full text

Enhancing geometric modeling in convolutional neural networks: limit deformable convolution by Wei Wang, Yuanze Meng, Han Li, Guiyong Chang, Shun Li, Chenghong Zhang

“…Furthermore, on the CoCo2017 dataset, different backbones equipped with our limit deformable module achieved satisfactory results. The source code for this work is publicly available at https://github.com/1977245719/LDCN.…”
Get full text

MDRN: Multi-distillation residual network for efficient MR image super-resolution by Liwei Deng, Jingyi Chen, Xin Yang, Sijuan Huang

“…Our method outperforms other existing methods in peak signal-noise ratio by up to 0.44–1.82 dB in 4× scale when GPU memory and runtime are lower than in other SR methods. The source code will be available at https://github.com/Jennieyy/MDRN.…”
Get full text

Multi-strategy enhanced marine predator algorithm: performance investigation and application in intrusion detection by Zhongmin Wang, Yujun Zhang, Jun Yu, YuanYuan Gao, Guangwei Zhao, Essam H. Houssein, Rui Zhong

“…Finally, we extend the proposed MEMPA to optimize the hyper-parameters of the Extreme Learning Machine (ELM) for intrusion detection, and the performance of MEMPA-ELM increases the average accuracy by 0.79% than the second-best model. The source code of this research can be downloaded at https://github.com/RuiZhong961230/MEMPA .…”
Get full text

A deep learning approach for white blood cells image generation and classification using SRGAN and VGG19 by Jannatul Ferdousi, Soyabul Islam Lincoln, Md. Khorshed Alom, Md. Foysal

“…The generated images of SRGAN overcome challenges associated with misclassification due to the poor resolution of microscopic images, while the use of a pretrained model as a classifier reduces classification complexity. The source code of the entire work is available at https://github.com/Jannatul-Ferdousi/SRGAN_VGG19_WBC.git.…”
Get full text

Multiscale Edge Enhancement and Progressive Change-Aware Network for Remote Sensing Change Detection by Yan Xing, Jiali Hu, Yunan Jia, Rui Huang

“…Experimental results demonstrate that our method outperforms 11 SOTA methods on the LEVIR-CD, SYSU-CD, and CDD datasets, achieving superior accuracy and efficiency. The source code can be found at <uri>https://github.com/take-off-xyz/MEPNet</uri>…”
Get full text

Model checking programs in process-oriented IEC 61131-3 Structured Text by Natalia O. Garanina, Sergey M. Staroletov, Vladimir E. Zyubin, Igor S. Anureev

“…The poST language is a promising process-oriented extension of the IEC 61131-3 Structured Text (ST) language designed to provide a conceptual consistency of the PLC source code with technological description of the process under control. …”
Get full text

Context-Informed Incremental Learning Improves Throughput and Reduces Drift in Regression-Based Myoelectric Control by Christian Morrell, Evan Campbell, Ethan Eddy, Erik Scheme

“…These findings demonstrate the viability of CIIL in an unconstrained, velocity-controlled environment for regression-based myoelectric control, and highlight the importance of capturing user behaviours when training regression-based myoelectric control systems. Source code is available on <uri>https://github.com/cbmorrell/adaptive-regression</uri>…”
Get full text

BioLake: an RNA expression analysis framework for prostate cancer biomarker powered by data lakehouse by Qiaowang Li, Yaser Gamallat, Jon George Rokne, Tarek A. Bismar, Reda Alhajj

“…The tool also significantly enhances result interpretability by providing the source code and detailed instructions. In terms of data storage design, BioLake adopts the data lakehouse architecture to provide storage scalability and analysis flexibility. …”
Get full text

Nature-inspired adaptive differential evolution: A unified meta-heuristic framework for complex engineering optimisation and UAV path planning by Shijie Fan, Ruichen Wang, Yang Song, David Crosbee, Kang Su

“…Finally, the paper discusses potential improvements and future research directions for the NIADE algorithm. The algorithm's source code is available in the Appendix D.…”
Get full text