Unveiling microbial communities with EasyAmplicon: A user‐centric guide to perform amplicon sequencing data analysis by Salsabeel Yousuf, Hao Luo, Meiyin Zeng, Lei Chen, Tengfei Ma, Xiaofang Li, Maosheng Zheng, Xin Zhou, Liang Chen, Jiao Xi, Hongye Lu, Huiluo Cao, Xiaoya Ma, Bian Bian, Pengfan Zhang, Jiqiu Wu, Renyou Gan, Baolei Jia, Linyang Sun, Zhicheng Ju, Yunyun Gao, Waqar Afzal Malik, Chuang Ma, Hujie Lyu, Yahui Li, Huiyu Hou, Yuanping Zhou, Defeng Bai, Yao Wang, Haifei Yang, Jiani Xun, Shengda Du, Tianyuan Zhang, Xiulin Wan, Kai Peng, Shanshan Xu, Tao Wen, Tong Chen, Yong‐Xin Liu

“…Abstract The advent of next‐generation sequencing has revolutionized microbiome research, enabling in‐depth exploration of microbial communities through amplicon sequencing. …”
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Single‐cell sequencing reveals the features of adaptive immune responses in the liver of a mouse model of dengue fever by Yizhen Yuan, Qian Chen, Zhe Li, Fangzhou Cai, Dan Li, Wei Wang

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Insight into Residues Critical for Antithrombin Function from an Expanded Database of Sequences That Includes Frog, Turtle and Ostrich Antithrombins by Marija Backovic, Peter G.W. Gettins

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Sequence Variation in Toxoplasma gondii rop17 Gene among Strains from Different Hosts and Geographical Locations by Nian-Zhang Zhang, Ying Xu, Si-Yang Huang, Dong-Hui Zhou, Rui-Ai Wang, Xing-Quan Zhu

“…The present study examined sequence variation in rhoptry protein 17 (ROP17) gene among T. gondii isolates from different hosts and geographical regions. …”
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Analysis of unmapped regions associated with long deletions in Korean whole genome sequences based on short read data by Yuna Lee, Kiejung Park, Insong Koh

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Prediction of early postoperative recurrence of hepatocellular carcinoma by habitat analysis based on different sequence of contrast-enhanced CT by Yubo Zhang, Yubo Zhang, Hongyan Ma, Peng Lei, Zhiyuan Li, Zhao Yan, Xinqing Wang

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Enriching Genomic Resources and Transcriptional Profile Analysis of Miscanthus sinensis under Drought Stress Based on RNA Sequencing by Gang Nie, Linkai Huang, Xiao Ma, Zhongjie Ji, Yajie Zhang, Lu Tang, Xinquan Zhang

“…To enrich the M. sinensis genomic databases and resources, we sequenced and annotated the transcriptome of M. sinensis by using an Illumina HiSeq 2000 platform. …”
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SMRT sequencing and ddPCR reveal the complexity of developmental trajectories and temporal dynamics of gut bifidobacterial communities in infants by Xu Gao, Tao Zhang, Xiaoye Bai, Qiannan Wen, Dongyu Li, Lai-Yu Kwok, Heping Zhang, Zhihong Sun

Subjects: “…Single-molecule real-time (SMRT) sequencing…”
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Cancer treatment comes to age: from one-size-fits-all to next-generation sequencing (NGS) technologies by Sepideh Parvizpour, Hanieh Beyrampour-Basmenj, Jafar Razmara, Farhad Farhadi, Mohd Shahir Shamsir

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Developing a Preliminary Clinical Prediction Model for Prognosis of Pneumonia Complicated with Heart Failure Based on Metagenomic Sequencing by Rongyuan Yang, Yong Duan, Dawei Wang, Qing Liu

“…The predictive factors of prognosis in patients with pneumonia complicated with heart failure (HF) have not been fully investigated yet, especially with the use of next-generation sequencing (NGS) of metagenome. Methods. Patients diagnosed with pneumonia complicated with HF were collected and divided into control group and NGS group. …”
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Detection and classification of long terminal repeat sequences in plant LTR-retrotransposons and their analysis using explainable machine learning by Jakub Horvath, Pavel Jedlicka, Marie Kratka, Zdenek Kubat, Eduard Kejnovsky, Matej Lexa

“…LTRs contain regulatory sequences essential for the life cycle of the retrotransposon. …”
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The genome sequence of a beetle, Brachypterus glaber (Newman, 1834) [version 1; peer review: 2 approved] by Michael F. Geiser, Talay Namintraporn, Freya Read, Maxwell V.L. Barclay

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Characterization of IXINITY® (Trenonacog Alfa), a Recombinant Factor IX with Primary Sequence Corresponding to the Threonine-148 Polymorph by Dougald M. Monroe, Richard J. Jenny, Kevin E. Van Cott, Shelly Buhay, Laura L. Saward

“…These studies have shown that trenonacog alfa is a highly pure product with a primary sequence and posttranslational modifications consistent with the common Thr-148 polymorphism of plasma-derived FIX.…”
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Genome-Wide Association Study for High Milk Yield in Saudi Arabian Dromedary using Whole Genome Sequencing by Faisal M. Alsubaie, Mohanad A. Ibrahim, Suheel Yousuf Wani, Ashraf Awad, Abdulwahed Fahad Alrefaei, Mikhlid H. Almutairi

“…We used whole-genome sequencing data of 61 dromedary camels to perform a genome-wide association study for investigated milk traits using a logistic regression model. …”
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Whole-genome sequence of bioactive streptomycete derived from mangrove forest in Malaysia, Streptomyces sp. MUSC 14 by Hooi-Leng Ser, Loh Teng-Hern Tan, Wen-Si Tan, Wai-Fong Yin, Kok-Gan Chan

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A comparative analysis of sequence composition in different lots of a phage display peptide library during amplification by Anders Wilgaard Sinkjaer, Ane Beth Sloth, Amanda Oester Andersen, Malte Jensen, Babak Bakhshinejad, Andreas Kjaer

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Sequential Multimodal Underwater Single-Photon Lidar Adaptive Target Reconstruction Algorithm Based on Spatiotemporal Sequence Fusion by Tian Rong, Yuhang Wang, Qiguang Zhu, Chenxu Wang, Yanchao Zhang, Jianfeng Li, Zhiquan Zhou, Qinghua Luo

“…The method consists of three steps: data preprocessing, sequence-optimized extreme value inference filtering, and collaborative variation strategy for image optimization to achieve high-quality target reconstruction in complex underwater environments. …”
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scaDA: A novel statistical method for differential analysis of single-cell chromatin accessibility sequencing data. by Fengdi Zhao, Xin Ma, Bing Yao, Qing Lu, Li Chen

“…Single-cell ATAC-seq sequencing data (scATAC-seq) has been widely used to investigate chromatin accessibility on the single-cell level. …”
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Comparative Genomic Hybridization (CGH) in New World Monkeys (Primates) Reveals the Distribution of Repetitive Sequences in Cebinae and Callitrichinae by Vanessa Milioto, Vincenzo Arizza, Aiti Vizzini, Polina L. Perelman, Melody E. Roelke-Parker, Francesca Dumas

“…The uncovered distribution of repetitive sequences is analyzed from an evolutionary perspective to elucidate the genomic dynamics of the repetitive sequences at the level of chromosomal organization.…”
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A novel Mutein of TNFα Containing the Arg-Gly-Asp Sequence Shows Reduced Toxicity in Intestine by H. Shikama, K. Miyata, N. Sakae, K. Kuroda, K. Nishimura, S. Yotsuya, M. Kato

“…The effects of human tumour necrosis factor-α (TNFα), or its mutein (F4168) having the cell adhesive Arg-Gly-Asp sequence at the N-terminus, on intestinal injury, were examined. …”
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