Application of Targeted Next-Generation Sequencing in Bronchoalveolar Lavage Fluid for the Detection of Pathogens in Pulmonary Infections by Dai X, Xu K, Tong Y, Li J, Dai L, Shi J, Xie H, Chen X

Subjects: “…targeted next-generation sequencing…”
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Single-cell RNA sequencing identifies CXADR as a fate determinant of the placental exchange surface by Dafina M. Angelova, Aleksandra Tsolova, Malwina Prater, Noura Ballasy, Wendi Bacon, Russell S. Hamilton, Danielle Blackwell, Ziyi Yu, Xin Li, Xin Liu, Myriam Hemberger, D. Stephen Charnock-Jones

“…Here, using single-cell RNA sequencing of mouse trophoblast stem cells during the earliest phases of differentiation, we identify gatekeepers of the stem cell state, notably Nicol1, and uncover unsuspected trajectories of cell lineage diversification as well as regulators of lineage entry points. …”
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Analysis of fetal fraction in non-invasive prenatal testing with low-depth whole genome sequencing by Xiaolei Xie, Weiguo Yin, Fuguang Li, Suxia Xuan, Yu Ouyang

“…Different NIPT methods and sequencing depths can lead to distinct minimum FF thresholds for Trisomy 21 (T21). …”
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Screening and Whole-Genome Sequencing Analysis of Fructofuranose-Metabolizing Lactiplantibacillus plantarum 19M03 by SUN Daqing, QI He, DI Ziqing, GE Xianglin, HONG Qingping, DU Xinrui, YAO Yuxi, LI Hongfei

Subjects: “…fructan metabolism; whole-genome sequencing; metabolic mechanism…”
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Research note: Whole-genome sequencing revealed genomic diversity dynamics in duck conserved populations by Yu-Ze Yang, Zhong-Tao Yin, Xiao-Ran Lin, Chun-Ying Zhao, Fang-Xi Yang, Fei-Fan Chen, Zhuo-Cheng Hou

“…In total, 277 Pekin duck conserved individuals and 40 Mallards as ancestral controls were collected. Each duck was sequenced at about 10X whole-genome coverage, while over 7.4 million single nucleotide polymorphisms (SNPs) in total were detected for genetic diversity analysis. …”
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Investigation of the Frequency and Characteristic Features of De Novo Mutations in Clinical Exome Sequence Trio Samples by Ebru Marzioğlu-özdemir, Tülin Çora, Ozkan Bagci, Batuhan Şanlıtürk, Ali Torabi, Nadir Koçak

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An example of nonsymmetric semi-classical form of class s=1; generalization of a case of Jacobi sequence by Mohamed Jalel Atia

“…We give explicitly the recurrence coefficients of a nonsymmetric semi-classical sequence of polynomials of class s=1. This sequence generalizes the Jacobi polynomial sequence, that is, we give a new orthogonal sequence {Pˆn(α,α+1)(x,μ)}, where μ is an arbitrary parameter with ℜ(1−μ)>0 in such a way that for μ=0 one has the well-known Jacobi polynomial sequence {Pˆn(α,α+1)(x)}, n≥0.…”
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Refining the interpretation of variants of uncertain significance in hereditary cancer screening through integrated RNA sequencing by Youbao Sha, J. Bryce Ortiz, Sara L. Bristow, Kate Loranger, Linyan Meng, Xiaonan Zhao, Fan Xia, Sheetal Parmar, Adam C. ElNaggar, Wenbo Xu

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Validation of Customized Cancer Panel for Detecting Somatic Mutations and Copy Number Alterations by Su-Hye Choi, Seung-Hyun Jung, Yeun-Jun Chung

Subjects: “…high-throughput DNA sequencing…”
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Clinical performance of real-time nanopore metagenomic sequencing for rapid identification of bacterial pathogens in cerebrospinal fluid: a pilot study by Yoon Hyun Sung, Yong Kuk Ju, Hak Jun Lee, Seung Min Park, Jin Woong Suh, Jeong Yeon Kim, Jang Wook Sohn, Young Kyung Yoon

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Whole genome sequence data of Trichoderma yunnanense strain TM10, a plant growth-promoting fungus and biocontrol agentNCBI by Dedat Prismantoro, Kah-Ooi Chua, Kelly Wan-Ee Teo, Rosamond Chan, Thomas Argyarich Jefferson, Nurul Shamsinah Mohd Suhaimi, Muhamad Shakirin Mispan, Mia Miranti, Febri Doni

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Exploring RNA-Seq Data Analysis Through Visualization Techniques and Tools: A Systematic Review of Opportunities and Limitations for Clinical Applications by Farhana Manzoor, Cyruss A. Tsurgeon, Vibhuti Gupta

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On the fine spectrum of the generalized difference operator B(r,s) over the sequence spaces c0 and c by Bilâl Altay, Feyzı Başar

“…We determine the fine spectrum of the generalized difference operator B(r,s) defined by a band matrix over the sequence spaces c0 and c, and derive a Mercerian theorem. …”
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COMPUTER ANALYSIS OF DATA ON GENE EXPRESSION IN BRAIN CELLS OBTAINED BY MICROARRAY TESTS AND HIGH-THROUGHPUT SEQUENCING by I. V. Medvedeva, O. V. Vishnevsky, N. S. Safronova, O. S. Kozhevnikova, M. A. Genaev, A. V. Kochetov, D. A. Afonnikov, Y. L. Orlov

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CEERS: Increasing Scatter along the Star-forming Main Sequence Indicates Early Galaxies Form in Bursts by Justin W. Cole, Casey Papovich, Steven L. Finkelstein, Micaela B. Bagley, Mark Dickinson, Kartheik G. Iyer, L. Y. Aaron Yung, Laure Ciesla, Ricardo O. Amorín, Pablo Arrabal Haro, Rachana Bhatawdekar, Antonello Calabrò, Nikko J. Cleri, Alexander de la Vega, Avishai Dekel, Ryan Endsley, Eric Gawiser, Mauro Giavalisco, Nimish P. Hathi, Michaela Hirschmann, Benne W. Holwerda, Jeyhan S. Kartaltepe, Anton M. Koekemoer, Ray A. Lucas, Sara Mascia, Bahram Mobasher, Pablo G. Pérez-González, Giulia Rodighiero, Kaila Ronayne, Sandro Tacchella, Benjamin J. Weiner, Stephen M. Wilkins

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Application of single-cell sequencing technology to the study of embryonic developmental toxicity of emerging contaminants: Progress and perspectives by Weizhao CAO, Yunhui ZHANG

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Water Supply Risk Analysis Based on Runoff Sequence Simulation with Change Point under Changing Environment by Yafang Cheng, Ping Feng, Jianzhu Li, Yuangang Guo, Peizhen Ren

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Nematicidal potential of Microbacterium maritypicum Sneb159 against Heterodera glycines and the complete genome sequence analysis by Jing Zhao, Jing Zhao, Jing Zhao, Zhifu Xing, Aatika Sikandar, Yuxi Duan

“…The complete genome sequence of the bacterium M. maritypicum Sneb159 was completed using the PacBio sequencing platform. …”
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Evaluation of 16S rRNA genes sequences and genome-based analysis for identification of non-pathogenic Yersinia by Angelina A. Kislichkina, Angelika A. Sizova, Yury P. Skryabin, Svetlana V. Dentovskaya, Andrey P. Anisimov

“…16S rRNA genes sequencing has been used for routine species identification and phylogenetic studies of bacteria. …”
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Comparative analysis of improved m6A sequencing based on antibody optimization for low-input samples by Jiafeng Lu, Wenjuan Xia, Jincheng Li, Liya Zhang, Chunfeng Qian, Hong Li, Boxian Huang

“…Abstract The most effective method for mapping N6-methyladenosine (m6A) is m6A RNA immunoprecipitation sequencing (MeRIP-seq). The quality of MeRIP-seq relies on various factors, with the anti-m6A antibody being a crucial determinant. …”
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