Single‐cell sequencing analysis reveals cetuximab resistance mechanism and salvage strategy in colorectal cancer by Shiyun Chen, Zhaoli Tan, Xiaojie Wu, Yanli Lin, Xiang Li, Yumeng Cui, Weiling Man, Fang Pang, Yanghua Li, Faliang Shi, Lu Han, Miaomiao Gou, Li Zhou, Zhikuan Wang, Youliang Wang, Guanghai Dai

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Combination of metagenomic next-generation sequencing and morphology for identifying Coccidioides immitis: a case report by Hong Liu, Kaixin Zhou, Chaoran Zhong, Ming Guan

Subjects: “…metagenomic next-generation sequencing (mNGS)…”
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Integrated Analysis of Metatranscriptome and Amplicon Sequencing to Reveal Distinctive Rhizospheric Microorganisms of Salt-Tolerant Rice by Wenna Meng, Zhenling Zhou, Mingpu Tan, Anqi Liu, Shuai Liu, Jiaxue Wang, Zhiguang Sun, Yiluo Tan, Yan Liu, Baoxiang Wang, Yanming Deng

“…In this study, we conducted rice rhizospheric microbial amplicon sequencing and metatranscriptome analysis, revealing substantial microbiomic differences between the salt-tolerant rice cultivar TLJIAN and the salt-sensitive HUAJING. …”
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Whole genome re-sequencing in 437 tobacco germplasms identifies plant height candidate genes by Yanru Song, Yuanheng Wang, Ying Liu, Haozhen Li, Jie Ding, Xingfu Wu, Yongping Li, Fangchan Jiao, Long Yang

“…To better understand the population genetic structure and the genetic basis of plant height in tobacco, 437 tobacco germplasms were whole genome re-sequencing in this study. A total of 2,263,775 high-quality single nucleotide polymorphisms were identified. …”
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The complete chloroplast genome sequences of monotypic genus Pseudogalium, and comparative analyses with its relative genera by Wei Yu, Xiao-Juan Li, Zhen Lv, Li-E Yang, De-Li Peng

“…Additionally, we identified 60 dispersed repeat sequences, 61–63 simple sequence repeats, and 30 codons within the 82 protein-coding genes that exhibited RSCU values greater than one. …”
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New Features Using Robust MVDR Spectrum of Filtered Autocorrelation Sequence for Robust Speech Recognition by Sanaz Seyedin, Seyed Mohammad Ahadi, Saeed Gazor

“…This paper presents a novel noise-robust feature extraction method for speech recognition using the robust perceptual minimum variance distortionless response (MVDR) spectrum of temporally filtered autocorrelation sequence. The perceptual MVDR spectrum of the filtered short-time autocorrelation sequence can reduce the effects of residue of the nonstationary additive noise which remains after filtering the autocorrelation. …”
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Microgrid Islanding Detection Using D-PMU and Phase Angle Analysis of Negative Sequence Impedance by Asim Chaulagain, Ramakrishna Gokaraju, Nurul Chowdhury, Krish Narendra

“…The method involves examining the changes in the negative sequence impedance angle over time. Unlike past literature that uses only the phase angles of voltage and current sequence components for islanding detection, this method is more effective, as the phase angle of impedance captures the overall effects of resistance and reactance, which offers a clearer understanding of electrical behavior during disturbances. …”
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Single-Cell RNA Sequencing Analysis of Steroidogenesis and Spermatogenesis Impairment in the Testis of db/db Mice by Yun Hu, Ting-Ting Cai, Reng-Na Yan, Bing-Li Liu, Bo Ding, Jian-Hua Ma

“…We performed single-cell RNA sequencing analysis in the testis of db/db and C57BL/6J mice. …”
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Complete Genome Sequence Analysis of the First Imported Mpox Virus Clade Ib Variant in China by Yin Song, Yong Yan, Jingyu Xu, Shencong Lv, Ganglin Ren, Yamei Zhou, Wanchen Song, Rui Ge, Peihua Xu, Guoying Zhu, Zhongwen Chen

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Endogenous Murine Leukemia Viruses: Relationship to XMRV and Related Sequences Detected in Human DNA Samples by Oya Cingöz, John M. Coffin

“…Here, we review the relationship of the human and mouse virus isolates and discuss the potential complications associated with the detection of MLV-like sequences from clinical samples.…”
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The Identification of Immune-Related Biomarkers for Osteoarthritis Immunotherapy Based on Single-Cell RNA Sequencing Analysis by Zhe Tan, Rong Chen, Hanyu Lin, Hong Wang

“…In this work, we obtain the traditional RNA sequencing data of OA patients from the GEO database. …”
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Sequencing and Integration of Cervical Manual Therapy and Vestibulo-oculomotor Therapy for Concussion Symptoms: Retrospective Analysis by Christopher Kevin Wong, Lauren Ziaks, Samantha Vargas, Tessia DeMattos, Chelsea Brown

“…While clinical practice guidelines outline treatments to address the symptoms that arise from the multiple involved systems, no preferred treatment sequence for post-concussion syndrome has emerged. # Purpose This study sought to describe the clinical and patient-reported outcomes for people with post-concussion symptoms after a protocol sequenced to address cervical dysfunction and benign paroxysmal positional vertigo within the first three weeks of injury, followed by integrated vision and vestibular therapy…”
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Complete mitochondrial genome sequence analysis revealed double matrilineal components in Indian Ghoongroo pigs by Pranab Jyoti Das, Satish Kumar, Manasee Choudhury, Seema Rani Pegu, K. Meera, Rajib Deb, Sunil Kumar, Santanu Banik, Vivek Kumar Gupta

“…Seven pigs (5 GH, 2 crossbred, namely Rani and Asha) were sequenced for complete mitochondrial genome, while 24 pigs (11 GH, 6 Rani, and 7 Asha) were sequenced for the complete D-loop of the mitochondrial genome. …”
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Simulation Research for the Influence of Mining Sequence on Coal Pillar Stability under Highwall Mining Method by Jing Huang, Fanbao Meng, Ge Wang, Yingkui Wu, Jinhao Wen

“…According to existing highwall mining methods, the mining sequence has a great influence on highwall stability. …”
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Targeted Next-Generation Sequencing in Pneumonia: Applications in the Detection of Responsible Pathogens, Antimicrobial Resistance, and Virulence by Liu B, Bao Z, Chen W, Xi X, Ge X, Zhou J, Zheng X, Zhang P, Deng W, Ding R, Zhou M, Fang J

Subjects: “…targeted next-generation sequencing…”
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Research on Parallel Assembly Sequence Planning of Vertical Planetary Gearboxes Based on the Ant Colony Algorithm by Xu Wentao, Zhang Liyong, Zhi Yanfeng, Li Tongjie, Wang Juan, Wang Changlu, Jiang Yehu, Chen Jijie, Wang Wenxiang

Subjects: “…Assembly sequence planning…”
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Cancer phylogenetic inference using copy number alterations detected from DNA sequencing data by Bingxin Lu

“…Somatic copy number alterations (CNAs) are important in cancer evolution and are often used as markers, alone or with other somatic mutations, for phylogenetic inferences, particularly in low-coverage DNA sequencing data. Many phylogenetic inference methods using CNAs detected from bulk or single-cell DNA sequencing data have been developed over the years. …”
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Deployment of next-generation sequencing approach for variant detection in myocardial infarction: A concise investigation by Desaraju Suresh Bhargav, Nadeem Siddiqui, Bhadra Murthy V, Vijaya Tartte, Vanaja V

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Differences in immune cells and gene expression in human milk by parity on integrated scRNA sequencing by Dae Yong Yi, Hong-Jai Park, Min Sun Shin, Hyoungsu Kim, Sang Jin Lee, Insoo Kang

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Simplified sequence repetition nodes-based fast successive cancellation decoding algorithm for polar code by Rui GUO, Yang LIU

“…In order to reduce the decoding latency of the successive cancellation (SC) decoding algorithm further, a kind of fast SC decoding algorithm based on simplified sequence repetition (SR) nodes, namely simplified sequence repetition node-based fast SC (SSRFSC), was proposed to optimize decoding latency issues of SC decoding algorithm.Different types of extended class of generalized parity-check (EG-PC) nodes were decomposed, merged and simplified based on the type of SR source node and decoding complexity, and Rate-C node was trimmed using fast simplified successive cancellation (Fast-SSC) decoding.Experimental results show that the decoding latency of the proposed algorithm can be reduced by up to 28% compared to the latest simplified sequence repetition (SRFSC) decoding algorithm when achieving similar decoding performance (approximately 0.1dB performance loss at frame error rate of 10^-3).Moreover, compared to the Fast-SSC decoding algorithm, the decoding latency of proposed algorithm can be reduced by up to 49%.…”
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