Somatic Mutations from Whole Exome Sequencing Analysis of the Patients with Biliary Tract Cancer by Kyong-Ah Yoon, Sang Myung Woo, Yun-Hee Kim, Sun-Young Kong, Sung-Sik Han, Sang-Jae Park, Woo Jin Lee

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SequenceCraft: machine learning-based resource for exploratory analysis of RNA-cleaving deoxyribozymes by M. Eremeyeva, Y. Din, N. Shirokii, N. Serov

“…Abstract Background Deoxyribozymes or DNAzymes represent artificial short DNA sequences bearing many catalytic properties. In particular, DNAzymes able to cleave RNA sequences have a huge potential in gene therapy and sequence-specific analytic detection of disease markers. …”
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Pre-T cell receptor-α immunodeficiency detected exclusively using whole genome sequencing by Daniele Merico, Nigel Sharfe, Harjit Dadi, Bhooma Thiruvahindrapuram, Jill de Rijke, Zakia Dahi, Mehdi Zarrei, Abdulrahman Al Ghamdi, Azhar Al Shaqaq, Linda Vong, Stephen W. Scherer, Chaim M. Roifman

“…In this study, we describe the role of whole genome sequencing (WGS) in providing a definitive diagnosis for a child with T cell deficiency, where targeted panel sequencing of SCID genes and whole exome sequencing had failed. …”
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Single-cell RNA sequencing identifies the expression of hemoglobin in chondrocyte cell subpopulations in osteoarthritis by Zhihao Zhang, Ting He, Hongwen Gu, Yuanhang Zhao, Shilei Tang, Kangen Han, Yin Hu, Hongwei Wang, Hailong Yu

Subjects: “…Single-cell sequencing…”
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Detection of human noroviruses in sewage by next generation sequencing in Shandong Province, 2019–2021 by Suting Wang, Mingyi Xu, Xiaojuan Lin, Ping Xiong, Yao Liu, Aiqiang Xu, Meng Chen, Shengxiang Ji, Zexin Tao

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From phylogenomics to breeding: Can universal target capture probes be used in the development of SNP markers for kinship analysis? by Kedra M. Ousmael, Ole K. Hansen

Subjects: “…amplicon sequencing…”
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Anaerobic fungi: Neocallimastigomycota by G.W. Griffith, S. Baker, K. Fliegerova, A. Liggenstoffer, M. van der Giezen, K. Voigt, G. Beakes

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Improving Geldanamycin Production in <i>Streptomyces geldanamycininus</i> Through UV Mutagenesis of Protoplast by Yuan Yuan, Lu Yang, Zhikai Fang, Haimin Chen, Fei Sun, Hong Jiang, Jian Zhou

Subjects: “…whole-genome sequencing…”
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RETRACTED ARTICLE: Whole-genome assembly of Akkermansia muciniphila sequenced directly from human stool by Aurélia Caputo, Grégory Dubourg, Olivier Croce, Sushim Gupta, Catherine Robert, Laurent Papazian, Jean-Marc Rolain, Didier Raoult

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Karakteristik Mekanik Komposit Polyester E-Glass dengan Stacking Sequences [0°, 90°, 0°] by Ilhamdi Ilhamdi, Dony Hidayat, Fadli Febriyan

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Novel Likely Pathogenic Variants Identified by Panel-Based Exome Sequencing in Congenital Cataract Patients by Doudou Chen, Tao Yang, Siquan Zhu

“…To identify likely pathogenic variants in three families with congenital cataracts via panel-based exome sequencing. Methods. A panel containing 153 genes associated with congenital cataracts was designed. …”
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Comparative evaluation of SNVs, indels, and structural variations detected with short- and long-read sequencing data by Shunichi Kosugi, Chikashi Terao

“…Abstract Short- and long-read sequencing technologies are routinely used to detect DNA variants, including SNVs, indels, and structural variations (SVs). …”
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A SEQUENCE OF FORMATION OF «URANPYROCHLORE» AND FLUOROCALCIOPYROCHLORE IN ALKALI PEGMATITES FROM THE VISHNEVYE MOUNTAINS, SOUTH URALS by V.I. Popova, V.A. Popov, I.A. Blinov, V.A. Kotlyarov, S.M. Lebedeva

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Identification of novel genetic variants associated with feline cardiomyopathy using targeted next-generation sequencing by Jade Raffle, Jose Novo Matos, Marsha Wallace, Lois Wilkie, Richard J. Piercy, Perry Elliott, David J. Connolly, Virginia Luis Fuentes, Androniki Psifidi

“…DNA was extracted from residual blood, and targeted next-generation sequencing was performed on two separate feline cohorts: an across-breed cohort (23 healthy cats and 21 HCM-affected pedigree or Domestic Shorthair cats), and a within-breed cohort of Birman pedigree cats (14 healthy, 8 HCM-affected, and 6 RCM-affected). …”
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An Efficient Approach to Mining Maximal Contiguous Frequent Patterns from Large DNA Sequence Databases by Md. Rezaul Karim, Md. Mamunur Rashid, Byeong-Soo Jeong, Ho-Jin Choi

Subjects: “…DNA sequence…”
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An Exploration of the Triplet Periodicity in Nucleotide Sequences with a Mature Self-Adaptive Spectral Rotation Approach by Bo Chen, Ping Ji

“…It outputs a random walk, that is, TP walk, in the complex plane for the query sequence. Each step in the walk is corresponding to a position in the sequence and generated from a long-term statistic of the TP in the sequence. …”
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Single-cell RNA sequencing reveals tumor heterogeneity in small cell neuroendocrine cervical carcinoma by Xuesong Xiang, Xiang Tao, Keqin Hua, Hua Jiang, Jingxin Ding

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Bayesian network structure learning by dynamic programming algorithm based on node block sequence constraints by Chuchao He, Ruohai Di, Bo Li, Evgeny Neretin

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Global Single-Cell Sequencing Landscape of Adipose Tissue of Different Anatomical Site Origin in Humans by Shixing Gu, Zhenyu Gong, Shuncai Liu, Guohao Lu, Yu Ling, Yanlin Wei, Ting Li, Ronghe Gu, Yongxian Rong, Junjun Li, Hongmian Li

“…Here, we combined single-cell RNA sequencing (scRNA-seq) of leg subcutaneous adipose tissue samples with scRNA-seq data from abdominal subcutaneous adipose tissue, leg subcutaneous adipose tissue, and visceral adipose tissue samples from public databases. …”
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S‐PLM: Structure‐Aware Protein Language Model via Contrastive Learning Between Sequence and Structure by Duolin Wang, Mahdi Pourmirzaei, Usman L. Abbas, Shuai Zeng, Negin Manshour, Farzaneh Esmaili, Biplab Poudel, Yuexu Jiang, Qing Shao, Jin Chen, Dong Xu

“…The results demonstrate S‐PLM's superior performance over sequence‐only PLMs on all protein clustering and classification tasks, achieving competitiveness comparable to state‐of‐the‐art methods requiring both sequence and structure inputs. …”
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