Temporal transcriptional profiling of host cells infected by a veterinary alphaherpesvirus using nanopore sequencing by Dóra Tombácz, Zoltán Maróti, Péter Oláh, Ákos Dörmő, Gábor Gulyás, Tibor Kalmár, Zsolt Csabai, Zsolt Boldogkői

“…Abstract In our research, we performed temporal transcriptomic profiling of host cells infected with Equid alphaherpesvirus 1 (EHV-1) by utilizing direct cDNA sequencing based on nanopore MinION technology. The sequencing reads were harnessed for transcript quantification at various time points. …”
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Whole Exome Sequencing Reveals Rare Variants in Genes Associated with Metabolic Disorders in Women with PCOS by Priyal Sharma, Ashutosh Halder, Manish Jain, Manish Tripathi

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COVFlow: phylodynamics analyses of viruses from selected SARS-CoV-2 genome sequences by Danesh, Gonché, Boennec, Corentin, Verdurme, Laura, Roussel, Mathilde, Trombert-Paolantoni, Sabine, Visseaux, Benoit, Haim-Boukobza, Stéphanie, Alizon, Samuel

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Surgical Versus Nonsurgical Interventions to Relieve upper Airway Obstruction in Children with Pierre Robin Sequence by Karen Kam, Meghan McKay, Joanna MacLean, Manisha B Witmans, Sheldon Spier, Ian Mitchell

“…BACKGROUND: Newborns with Pierre Robin sequence (PRS) often experience chronic intermittent hypoxemia/hypoventilation associated with airway obstruction. …”
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Sequence-variable attention temporal convolutional network for volcanic lithology identification based on well logs by Hanlin Feng, Zitong Zhang, Chunlei Zhang, Chengcheng Zhong, Qiaoyu Ma

“…The sequence attention mechanism, acting along the depth dimension, focuses on modeling the multiscale sequence features. …”
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Whole-Genome Sequencing of Mexican Strains of Anaplasma marginale: An Approach to the Causal Agent of Bovine Anaplasmosis by Fernando Martínez-Ocampo, Rosa Estela Quiroz-Castañeda, Itzel Amaro-Estrada, Edgar Dantán-González, Jesús Francisco Preciado de la Torre, Sergio Rodríguez-Camarillo

“…We have previously reported the first genome sequence of a Mexican strain of A. marginale (Mex-01-001-01). …”
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Detection of COVID-19 Using Protein Sequence Data via Machine Learning Classification Approach by Siti Aminah, Gianinna Ardaneswari, Mufarrido Husnah, Ghani Deori, Handi Bagus Prasetyo

“…We utilized a dataset comprising 2000 protein sequences, including 1000 SARS-CoV-2 sequences and 1000 non-SARS-CoV-2 sequences. …”
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Retracted: Multiple-Devices-Process Integrated Scheduling Algorithm with Time-Selective Strategy for Process Sequence by null Complexity

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Improved Double-Layer Structure Multilabel Classification Model via Optimal Sequence and Attention Mechanism by Geqiao Liu, Mingjie Tan

“…To solve the problem of algorithm accuracy degradation caused by the order of classifiers, we adopt the OSS (optimal sequence selection) algorithm to find the optimal sequence of tags. …”
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Genetic Risk Prediction for Normal-Karyotype Acute Myeloid Leukemia Using Whole-Exome Sequencing by Seong Gu Heo, Eun Pyo Hong, Ji Wan Park

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Linear Complexity of a New Class of Quaternary Generalized Cyclotomic Sequence with Period 2pm by Pinhui Ke, Yan Zhong, Shengyuan Zhang

“…Sequences with high linear complexity property are of importance in applications. …”
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Ongoing measles outbreak in Romania: Clinical investigation and molecular epidemiology performed on whole genome sequences by Robert Hohan, Marius Surleac, Victor Daniel Miron, Andreea Tudor, Ana-Maria Tudor, Oana Săndulescu, Ovidiu Vlaicu, Victoria Aramă, Daniela Pițigoi, Adriana Hristea, Anca Cristina Drăgănescu, Dimitrios Paraskevis, Leontina Bănică, Dan Oțelea, Simona Paraschiv

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Computational protocol for analyzing whole-genome sequencing data from Staphylococcus aureus clinical isolates by Miquel Sánchez-Osuna, Ivan Erill, Oriol Gasch, Oscar Q. Pich

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Exome sequencing reveals IFT172 variants in patients with non-syndromic cholestatic liver disease. by Magdaléna Neřoldová, Elżbieta Ciara, Janka Slatinská, Soňa Fraňková, Petra Lišková, Radana Kotalová, Janka Globinovská, Markéta Šafaříková, Lucie Pfeiferová, Hana Zůnová, Lenka Mrázová, Viktor Stránecký, Alena Vrbacká, Ondřej Fabián, Eva Sticová, Daniela Skanderová, Jan Šperl, Marta Kalousová, Tomáš Zima, Milan Macek, Joanna Pawlowska, A S Knisely, Stanislav Kmoch, Milan Jirsa

“…We aimed to explore the outcome of whole-exome sequencing (WES) in a cohort of 51 patients with this diagnosis.…”
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Whole genome sequence of MUM116, a Bacillus species isolated from intertidal soil by Hooi-Leng Ser, Wen-Si Tan, Wai-Fong Yin, Kok-Gan Chan, Vengadesh Letchumanan

“…In order to obtain better understanding of the strain, the genome sequence of MUM 116 was acquired through Illumina MiSeq sequencing platform and yielded 5,720,395 bp along with 165 tRNA and 25 rRNA genes. …”
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T2*-weighted imaging for detection of intracranial silicone oil in MRI obtained with motion correction sequences by Ryuta Yasuda, Masayuki Maeda, Kenichi Takada, Katsuhiro Inoue, Masataka Sugao, Hidenori Suzuki

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New Hosts of Simplicimonas similis and Trichomitus batrachorum Identified by 18S Ribosomal RNA Gene Sequences by Kris Genelyn B. Dimasuay, Orlie John Y. Lavilla, Windell L. Rivera

“…Genomic DNA was extracted using Chelex method and the 18S rRNA gene was successfully amplified through novel sets of primers and undergone DNA sequencing. Aligned isolate sequences together with retrieved 18S rRNA gene sequences of known trichomonads were utilized to generate phylogenetic trees using maximum likelihood and neighbor-joining analyses. …”
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Pituitary Metastatic Composite Tumors: A Case Report with Next-Generation Sequencing and Review of the Literature by Matthew Helton, Muhammad Abu-Rmaileh, Kevin Thomas, Murat Gokden, Alissa Kanaan, Analiz Rodriguez

“…In our patient, the presence of VHL and Notch2 mutations in both tumors highlights the possibility of using next-generation sequencing to help identify therapeutic targets even in complex composite neoplasms.…”
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Single-cell RNA sequencing revealed PPARG promoted osteosarcoma progression: based on osteoclast proliferation by Lei Sun, Jinhao Zhang, Zhikai Xiahou, Zhenzhen Zhao, Yanchen Liang

Subjects: “…single-cell sequencing…”
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Whole genome sequencing of a novel carrageenan-degrading bacterium Photobacterium rosenbergii and oligosaccharide preparation by Jing Chen, Jing Chen, Runmin Chen, Kit-Leong Cheong, Zhuo Wang, Rui Li, Xuejing Jia, Qiaoli Zhao, Xiaofei Liu, Bingbing Song, Saiyi Zhong, Saiyi Zhong

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