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A hammerhead ribozyme selects mechanically stable conformations for catalysis against viral RNA
Published 2025-02-01“…Among them, hammerhead is the smallest and best characterized ribozyme. However, the structure and biochemical data of ribozymes have been disagreed on, making the understanding of its catalysis mechanism a longstanding issue. …”
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Computed Energetics of Nucleotides in Spatial Ribozyme Structures: An Accurate Identification of Functional Regions from Structure
Published 2004-01-01“…Ribozymes are functionally diverse RNA molecules with intrinsic catalytic activity. …”
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RNase P cleavage of pseudoknot substrates reveals differences in active site architecture that depend on residue N-1 in the 5’ leader
Published 2025-12-01Subjects: Get full text
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Biomathematical enzyme kinetics model of prebiotic autocatalytic RNA networks: degenerating parasite-specific hyperparasite catalysts confer parasite resistance and herald the birt...
Published 2025-01-01“…Secondly, ribozyme polymerases are capable of sustainable auto-amplification and of surmounting the fatal error threshold. …”
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Proteins with RNA Chaperone Activity: A World of Diverse Proteins with a Common Task—Impediment of RNA Misfolding
Published 2011-01-01“…RNA chaperone activity is studied in vitro and in vivo using oligonucleotide- or ribozyme-based assays. Due to their functional as well as structural diversity, a common chaperoning mechanism or universal motif has not yet been identified. …”
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Synthesis of Specifically Modified Oligonucleotides for Application in Structural and Functional Analysis of RNA
Published 2011-01-01“…Beyond synthetic RNAs for antisense, aptamer, ribozyme, and siRNA technologies, oligoribonucleotides carrying site-specific modifications for structure and function studies are needed. …”
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Serum microRNAs as Diagnostic Markers in Polycystic Ovary Syndrome: A Narrative Review
Published 2025-01-01“…The profiles of microRNAs differ depending on the tissue from which they originate. Due to ribozyme activity, microRNAs are persistent and resistant to hydrolysis. …”
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Gene Therapy for HIV Infections: Intracellular Immunization
Published 1999-01-01“…These strategies include the use of single-chain antibodies, capsid-targeted viral inactivation, transdominant negative mutants, ribozymes, antisense oligonucleotides and RNA decoys. …”
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The potential of fluorogenicity for single molecule FRET and DyeCycling
Published 2024-01-01“…Single Molecule Förster Resonance Energy Transfer (smFRET) is a popular technique to directly observe biomolecular dynamics in real time, offering unique mechanistic insight into proteins, ribozymes, and so forth. However, inevitable photobleaching of the fluorophores puts a stringent limit on the total time a surface-tethered molecule can be monitored, fundamentally limiting the information gain through conventional smFRET measurements. …”
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