tRNA epitranscriptomics and biased codon are linked to proteome expression in Plasmodium falciparum by Chee Sheng Ng, Ameya Sinha, Yaw Aniweh, Qianhui Nah, Indrakanti Ramesh Babu, Chen Gu, Yok Hian Chionh, Peter C Dedon, Peter R Preiser

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Combinatorial depletion analysis to assemble the network architecture of the SAGA and ADA chromatin remodeling complexes by Kenneth K Lee, Mihaela E Sardiu, Selene K Swanson, Joshua M Gilmore, Michael Torok, Patrick A Grant, Laurence Florens, Jerry L Workman, Michael P Washburn

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Extensive quantitative remodeling of the proteome between normal colon tissue and adenocarcinoma by Jacek R Wiśniewski, Paweł Ostasiewicz, Kamila Duś, Dorota F Zielińska, Florian Gnad, Matthias Mann

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Comparison of bacterial intracellular and secreted proteins produced in milk versus medium for Escherichia coli by proteomic analysis by Qiyue Sun, Yanxin Li, Hongning Jiang, Qijing Du, Jun Wang, Rongbo Fan, Rongwei Han, Yongxin Yang

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Diagnostics and correction of batch effects in large‐scale proteomic studies: a tutorial by Jelena Čuklina, Chloe H Lee, Evan G Williams, Tatjana Sajic, Ben C Collins, María Rodríguez Martínez, Varun S Sharma, Fabian Wendt, Sandra Goetze, Gregory R Keele, Bernd Wollscheid, Ruedi Aebersold, Patrick G A Pedrioli

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Sex differences in resting skeletal muscle and the acute and long-term response to endurance exercise in individuals with overweight and obesity by Simon I. Dreher, Thomas Goj, Christine von Toerne, Miriam Hoene, Martin Irmler, Meriem Ouni, Markus Jähnert, Johannes Beckers, Martin Hrabě de Angelis, Andreas Peter, Anja Moller, Andreas L. Birkenfeld, Annette Schürmann, Stefanie M. Hauck, Cora Weigert

Subjects: “…LC-MSMS based quantitative proteomics…”
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From coarse to fine: the absolute Escherichia coli proteome under diverse growth conditions by Matteo Mori, Zhongge Zhang, Amir Banaei‐Esfahani, Jean‐Benoît Lalanne, Hiroyuki Okano, Ben C Collins, Alexander Schmidt, Olga T Schubert, Deok‐Sun Lee, Gene‐Wei Li, Ruedi Aebersold, Terence Hwa, Christina Ludwig

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Deciphering preferential interactions within supramolecular protein complexes: the proteasome case by Bertrand Fabre, Thomas Lambour, Luc Garrigues, François Amalric, Nathalie Vigneron, Thomas Menneteau, Alexandre Stella, Bernard Monsarrat, Benoît Van den Eynde, Odile Burlet‐Schiltz, Marie‐Pierre Bousquet‐Dubouch

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4D-DIA-Based Quantitative Proteomic Analysis Reveals the Involvement of TRPV2 Protein in Duck Tembusu Virus Replication by Jimin Chen, Fan Yang, Lianjie Lai, Huihuang Li, Chengfu Pan, Xinguo Bao, Weimin Lin, Ruiyi Lin

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Mapping the proteome landscape of Indian Zebu (Sahiwal) spermatozoa using high-resolution mass spectrometry and in-silico annotation by Vanya Bhushan, Syed Azmal Ali, Abhishek Parashar, Sudarshan Kumar, Ashok Kumar Mohanty

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Protein dysregulation during Leishmania infantum infection in anti-TNF immunosuppressed mice revealed through quantitative proteomics analysis of extracellular vesicles by Lorena Bernardo, Lorena Bernardo, Ana Montero-Calle, Jose Carlos Solana, Jose Carlos Solana, Marina Lozano-Rendal, Ana Torres, Ana Torres, Carmen Sánchez, Rodrigo Barderas, Rodrigo Barderas, Javier Moreno, Javier Moreno, Eugenia Carrillo, Eugenia Carrillo

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Data‐independent acquisition‐based SWATH‐MS for quantitative proteomics: a tutorial by Christina Ludwig, Ludovic Gillet, George Rosenberger, Sabine Amon, Ben C Collins, Ruedi Aebersold

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Metabolism-related proteins as biomarkers for predicting prognosis in polycystic ovary syndrome by Nan Ding, Ruifang Wang, Peili Wang, Fang Wang

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YX-112, a novel celastrol-derived PROTAC, inhibits the development of triple-negative breast cancer by targeting the degradation of multiple proteins by Yongxue Gu, Mengmeng Yang, Wenbin Wang, Lihua Li, Ying Ma, Wenshan Liu, Wenshan Liu, Qiang Zhao

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Quantitative Proteomics Revealed the Molecular Regulatory Network of Lysine and the Effects of Lysine Supplementation on Sunit Skeletal Muscle Satellite Cells by Mingxu Wang, Fan Bai, Qinan Zhao, Jianan Shi, Yutian Hao, Jindi Wu

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Quantitative proteomic analysis unveils a critical role of VARS1 in hepatocellular carcinoma aggressiveness through the modulation of MAGI1 expression by Natalia Hermán-Sánchez, Mercedes del Rio-Moreno, Rubén Ciria, Marina E. Sánchez-Frias, Maite G. Fernández-Barrena, Iker Uriarte, Eduardo Chicano-Galvez, Ignacio Ortea, Ángela Peralbo-Molina, Javier Briceño, Matías A. Avila, Manuel Rodríguez-Perálvarez, Raúl M. Luque, Juan L. López-Cánovas, Manuel D. Gahete

Subjects: “…Quantitative proteomics…”
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Higher‐order modular regulation of the human proteome by Georg Kustatscher, Martina Hödl, Edward Rullmann, Piotr Grabowski, Emmanuel Fiagbedzi, Anja Groth, Juri Rappsilber

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Global quantitative proteome analysis of a multi-resistant Klebsiella pneumoniae strain by Marie-Sofie Illenseher, Marie-Sofie Illenseher, Christian Hentschker, Manuela Gesell Salazar, Larissa Milena Busch, Lisa Zierke, Alexander Reder, Stephan Michalik, Uwe Völker, Sven Hammerschmidt, Kristin Surmann

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Mitochondrial proteomics of the acetic acid – induced programmed cell death response in a highly tolerant Zygosaccharomyces bailii – derived hybrid strain by Joana F Guerreiro, Belém Sampaio-Marques, Renata Soares, Ana Varela Coelho, Cecília Leão, Paula Ludovico, Isabel Sá-Correia

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Proteomic characteristics of bronchoalveolar lavage fluid in children with mild and severe Mycoplasma pneumoniae pneumonia by Ao Liang, Yaqi Zhu, Xiaoxue Wu, Qingyan Zhang, Yafang He, Anbang Wang, Anbang Wang, Chunchen Wu, Chunchen Wu, Jianbo Xia, Jianbo Xia, Jianbo Xia

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