Detection of circular permutations by Protein Language Models by Yue Hu, Bin Huang, Chun Zi Zang, Jia Jie Xu

Subjects: “…Circular Permutation； Protein Language Models； Protein Structure Alignment…”
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Benchmarking protein language models for protein crystallization by Raghvendra Mall, Rahul Kaushik, Zachary A. Martinez, Matt W. Thomson, Filippo Castiglione

Subjects: “…Open protein language models (PLMs)…”
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Ion channel classification through machine learning and protein language model embeddings by Ghazikhani Hamed, Butler Gregory

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EquiRank: Improved protein-protein interface quality estimation using protein language-model-informed equivariant graph neural networks by Md Hossain Shuvo, Debswapna Bhattacharya

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UniAMP: enhancing AMP prediction using deep neural networks with inferred information of peptides by Zixin Chen, Chengming Ji, Wenwen Xu, Jianfeng Gao, Ji Huang, Huanliang Xu, Guoliang Qian, Junxian Huang

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S‐PLM: Structure‐Aware Protein Language Model via Contrastive Learning Between Sequence and Structure by Duolin Wang, Mahdi Pourmirzaei, Usman L. Abbas, Shuai Zeng, Negin Manshour, Farzaneh Esmaili, Biplab Poudel, Yuexu Jiang, Qing Shao, Jin Chen, Dong Xu

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Evaluating the advancements in protein language models for encoding strategies in protein function prediction: a comprehensive review by Jia-Ying Chen, Jia-Ying Chen, Jia-Ying Chen, Jing-Fu Wang, Jing-Fu Wang, Jing-Fu Wang, Yue Hu, Yue Hu, Yue Hu, Xin-Hui Li, Xin-Hui Li, Xin-Hui Li, Yu-Rong Qian, Yu-Rong Qian, Yu-Rong Qian, Chao-Lin Song, Chao-Lin Song, Chao-Lin Song

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