Evaluating the advancements in protein language models for encoding strategies in protein function prediction: a comprehensive review by Jia-Ying Chen, Jia-Ying Chen, Jia-Ying Chen, Jing-Fu Wang, Jing-Fu Wang, Jing-Fu Wang, Yue Hu, Yue Hu, Yue Hu, Xin-Hui Li, Xin-Hui Li, Xin-Hui Li, Yu-Rong Qian, Yu-Rong Qian, Yu-Rong Qian, Chao-Lin Song, Chao-Lin Song, Chao-Lin Song

Subjects: “…protein function prediction…”
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Protein tyrosine kinase but not protein kinase C inhibition blocks receptor induced alveolar macrophage activation by K. Pollock, M. T. Withnall

“…The selective enzyme inhibitors genistein and Ro 31-8220 were used to assess the importance of protein tyrosine kinase (PTK) and protein kinase C (PKC), respectively, in N-formyl-methionyl-leucyl-phenylalanine (FMLP) induced generation of superoxide anion and thromboxane B2 (TXB2) in guinea-pig alveolar macrophages (AM). …”
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Identification of Breast Cancer Biomarkers by Constructing Protein-Protein Interaction and miRNAs-mRNAs Networks by Azizeh Asadzadeh, Bita Behboodian, Parsa Bernoos, Masoumeh Shojaei Barjouei

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ProG-SOL: Predicting Protein Solubility Using Protein Embeddings and Dual-Graph Convolutional Networks by Gen Li, Ning Zhang, Long Fan

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Mitochondrial Fusion Proteins and Human Diseases by Michela Ranieri, Simona Brajkovic, Giulietta Riboldi, Dario Ronchi, Federica Rizzo, Nereo Bresolin, Stefania Corti, Giacomo P. Comi

“…The most relevant proteins involved in the mitochondrial fusion process are three GTPase dynamin-like proteins: mitofusin 1 (MFN1) and 2 (MFN2), located in the outer mitochondrial membrane, and optic atrophy protein 1 (OPA1), in the inner membrane. …”
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The Desmosomal Plaque Proteins of the Plakophilin Family by Steffen Neuber, Mario Mühmer, Denise Wratten, Peter J. Koch, Roland Moll, Ansgar Schmidt

“…Three related proteins of the plakophilin family (PKP1_3) have been identified as junctional proteins that are essential for the formation and stabilization of desmosomal cell contacts. …”
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Editorial: Dietary protein for human health by Paul J. Moughan, Wouter H. Hendriks, Suzanne M. Hodgkinson, Sylvia M. S. Chungchunlam, Wen Xin Janice Lim, Marco Mensink, Natascha Stroebinger, Nikkie van der Wielen

Subjects: “…dietary protein…”
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Functional protein mining with conformal guarantees by Ron S. Boger, Seyone Chithrananda, Anastasios N. Angelopoulos, Peter H. Yoon, Michael I. Jordan, Jennifer A. Doudna

“…Abstract Molecular structure prediction and homology detection offer promising paths to discovering protein function and evolutionary relationships. However, current approaches lack statistical reliability assurances, limiting their practical utility for selecting proteins for further experimental and in-silico characterization. …”
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Role of S100 Proteins in Colorectal Carcinogenesis by Paula Moravkova, Darina Kohoutova, Stanislav Rejchrt, Jiri Cyrany, Jan Bures

“…The family of S100 proteins represents 25 relatively small (9–13 kD) calcium binding proteins. …”
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The lactate metabolism and protein lactylation in epilepsy by Xi Kuang, Shuang Chen, Qingmei Ye

Subjects: “…protein lactylation…”
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Exploring proteins within the coccolith matrix by Craig J. Dedman, Nishant Chauhan, Alba González-Lanchas, Chloë Baldreki, Adam A. Dowle, Tony R. Larson, Renee B. Y. Lee, Rosalind E. M. Rickaby

“…Protein features were compared between species and against biomineralisation proteins previously identified in other marine calcifying organisms. …”
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Gliadin Proteins in Muffins with Quinoa Flour by Vesna S. Gojković Cvjetković, Dragana M. Škuletić, Željka R. Marjanović-Balaban, Dragan P. Vujadinović, Danijela Z. Rajić, Vladimir M. Tomović

“…However, gluten, the main protein in wheat flour, is commonly associated with celiac disease. …”
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Unfolded protein responses in T cell immunity by Wencan Zhang, Xu Cao

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Single-Cell protein for feed and food by Ledbetter Fred

Subjects: “…single-cell protein (scp)…”
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The Unfolded Protein Response and Diabetic Retinopathy by Jacey Hongjie Ma, Josh J. Wang, Sarah X. Zhang

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Trafficked Proteins—Druggable in Plasmodium falciparum? by Jasmin Lindner, Kamila Anna Meissner, Isolmar Schettert, Carsten Wrenger

“…Interfering with the action or the transport of these proteins will impede proliferation of the parasite. …”
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Biodegradable Packaging Made from Proteins by Samar Sahraee, Jafar Milani

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Stress Proteins and Pancreatic Cancer Metastasis by Carla E. Cano, Juan L. Iovanna

“…This review summarizes the multiple functions accomplished by one major factor of pancreatic cancer cell stress response, the stress protein p8.…”
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Protein Repair and Degradation during Aging by Bertrand Friguet

“…Cellular aging is characterized by a build-up of oxidatively modified proteins. The steady-state level of oxidized proteins depends on the balance between the rate of protein oxidative damage and the rates of protein degradation and repair. …”
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Bacterial Ice Crystal Controlling Proteins by Janet S. H. Lorv, David R. Rose, Bernard R. Glick

“…Ice crystal controlling proteins include both antifreeze and ice nucleation proteins. …”
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