An atlas of metabolites driving chemotaxis in prokaryotes by Maéva Brunet, Shady A. Amin, Iurii Bodachivskyi, Unnikrishnan Kuzhiumparambil, Justin R. Seymour, Jean-Baptiste Raina

“…Without any synthesis of these scattered results, our current understanding of the molecules affecting prokaryotic behaviours is fragmented. Here, we examined 341 publications to assemble a comprehensive database of prokaryotic chemoeffectors, compiling the effect (attractant, repellent or neutral) of 926 chemicals previously tested and the chemotactic behaviour of 394 strains. …”
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Similarities and Differences in the Glycosylation Mechanisms in Prokaryotes and Eukaryotes by Anne Dell, Alaa Galadari, Federico Sastre, Paul Hitchen

“…Recent years have witnessed a rapid growth in the number and diversity of prokaryotic proteins shown to carry N- and/or O-glycans, with protein glycosylation now considered as fundamental to the biology of these organisms as it is in eukaryotic systems. …”
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Recent advances of lysine lactylation in prokaryotes and eukaryotes by Wenjuan Zhao, Wenjuan Zhao, Jiayi Xin, Jiayi Xin, Xin Yu, Zhifang Li, Nan Li

“…In addition, the physiological and pathological implications of lysine lactylation are reviewed for different organisms, especially in prokaryotic cells. Finally, we end with a discussion of the limitations of the studies so far and propose future directions for lysine lactylation investigations.…”
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SPATIALLY DISTRIBUTED MODELING OF PROKARYOTIC COMMUNITY EVOLUTION by S. A. Lashin, E. A. Mamontova, Yu. G. Matushkin

“…The 0D and 1D poisoner–prey prokaryotic community models are compared. It is shown that the community stability is influenced by the spatial distribution of substrates and prokaryotic cells.…”
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Prokaryotic communities associated with marine hydrothermal systems of the Gulf of California by Ruth Noemí Aguila-Ramírez, Bárbara González-Acosta, Karla María Gutiérrez-Almada, José Manuel Borges-Souza, Rocío Guadalupe Cervantes-Gámez, Eduardo Quiróz-Guzmán

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Prokaryotic diversity of the rhizosphere from Argentinean wine-producing regions by Andres Martin Toscani, Monica Oyuela Aguilar, Constanza Rey, Ramiro Eugenio Rocco Welsh, Alex Gobbi, Maria Florencia del Papa, Liliana Carmen Semorile, Lars Hestbjerg Hansen, Mariano Pistorio

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Prokaryotic cellulase gene clusters derived from 2,305 metagenomes by Bing Song, Fernando D. K. Tria, Josip Skejo

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HIGH-THROUGHPUT SIMULATIONS OF PROKARYOTIC COMMUNITY EVOLUTION WITH HAPLOID EVOLUTIONARY CONSTRUCTOR by Z. S. Mustafin, Yu. G. Matushkin, S. A. Lashin

“…The software is used to simulate the functioning and evolution of prokaryotic communities. A parallel version of the software package was created using the MPI technology. …”
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DFAST_QC: quality assessment and taxonomic identification tool for prokaryotic Genomes by Mohamed Elmanzalawi, Takatomo Fujisawa, Hiroshi Mori, Yasukazu Nakamura, Yasuhiro Tanizawa

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The Characterization of Prokaryotic Diversity in Lake Beyşehir Using a 16s Metagenomics Study by Ercan Arıcan, Hatice Kübra Kızıl Pat, Neşe Akçay, Sultan Fidan Pedük, Fahri Pat

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ProAD – A database of rotary ion-translocating ATPases in prokaryotic genomes by A. V. Litvin, A. V. Litvin, A. V. Litvin, A. S. Lapashina, A. P. Ermidis, M.S. Gelfand, B. A. Feniouk, B. A. Feniouk

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The use of graphics accelerators to detect functional signals in the regulatory regions of prokaryotic genes by O. V. Vishnevsky, A. V. Bocharnikov, A. A. Romanenko

“…Sets of degenerate motifs have been identified for each species of prokaryotes. They were classified on the basis of similarity with the transcription factor binding sites of E. coli.…”
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Co(II) Coordination in Prokaryotic Zinc Finger Domains as Revealed by UV-Vis Spectroscopy by Valeria Sivo, Gianluca D’Abrosca, Luigi Russo, Rosa Iacovino, Paolo Vincenzo Pedone, Roberto Fattorusso, Carla Isernia, Gaetano Malgieri

“…Here, exploiting the capability of the prokaryotic zinc finger to use different combinations of residues to properly coordinate the structural metal ion, we provide the UV-Vis characterization of Co(II) addition to Ros87 and its mutant Ros87_C27D which bears an unusual CysAspHis2 coordination sphere. …”
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CompàreGenome: a command-line tool for genomic diversity estimation in prokaryotes and eukaryotes by Gabriele Moro, Rossano Atzeni, Ali Al-Subhi, Maria Giovanna Marche

“…Here, we introduce CompàreGenome, a command-line tool specifically designed for genomic diversity estimation analyses. Suitable for both prokaryotes and eukaryotes, this tool is particularly valuable in the early stages of studies when little information is available about the genetic differences or similarities among compared organisms. …”
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Comparative metagenomics reveals the metabolic flexibility of coastal prokaryotic microbiomes contributing to lignin degradation by Qiannan Peng, Lu Lin

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A dual expression plasmid with Microcin B17 compatible with both prokaryotic and mammalian systems by Agnieszka M. Murakami, Katsuhiro Nagatomo, Hiroshi Koda, Yasutaka Niwa, Manabu Murakami

“…The results indicate that the novel pgMAX-II/MccB17 plasmid supports efficient and straightforward subcloning of external genes, achieving dual expression in both prokaryotic (E. coli) and mammalian systems. This suggests its broad applicability as a versatile dual-expression plasmid. • The short toxin peptide gene, MccB17, became available. • MccB17 showed potential for efficient DNA recombination similar to CcdB. • Using MccB17, we successfully established a dual expression plasmid that functions effectively in both prokaryotic and mammalian cells.…”
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Uneven distribution of prokaryote-derived horizontal gene transfer in fungi: a lifestyle-dependent phenomenon by Fei Liu, Shi-Hui Wang, Ratchadawan Cheewangkoon, Rui-Lin Zhao

“…ABSTRACT Horizontal gene transfer (HGT) in fungi is less understood despite its significance in prokaryotes. In this study, we systematically searched for HGT events in 829 representative fungal genomes. …”
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Construction of prokaryotic system for expression of porcine circovirus type 2 ORF-2 gene fragment by A. G. Galeeva, A. R. Akhunova, K. V. Usoltsev, N. I. Khammadov, M. A. Efimova

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GLiDe: a web-based genome-scale CRISPRi sgRNA design tool for prokaryotes by Tongjun Xiang, Huibao Feng, Xin-hui Xing, Chong Zhang

“…It boasts an extensive built-in database, encompassing 1,397 common prokaryotic species as a comprehensive design resource. …”
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Preliminary Study on the Impact of Ruminal Ciliate Inoculation in Fauna-Free Conditions on the Ruminal Fermentation and Ciliate–Prokaryote Association In Vitro by Geonwoo Kim, Woohyung Lee, Tansol Park

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