Nf-Root: A Best-Practice Pipeline for Deep-Learning-Based Analysis of Apoplastic pH in Microscopy Images of Developmental Zones in Plant Root Tissue by Julian Wanner, Luis Kuhn Cuellar, Luiselotte Rausch, Kenneth W. Berendzen, Friederike Wanke, Gisela Gabernet, Klaus Harter, Sven Nahnsen

“…In short, a deep-learning module deploys deterministically trained convolutional neural network models and augments the segmentation predictions with measures of prediction uncertainty and model interpretability, while aiming to facilitate result interpretation and verification by experienced plant biologists. We observed a high statistical similarity between the manually generated results and the output of the nf-root.…”
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