Phylogeny and taxonomy of the shore-fly tribe Ephydrini with comments on related tribes in Ephydrinae (Diptera: Ephydridae) by Wayne N. Mathis, Luciane Marinoni, Tatiana A. Sepúlveda

Get full text

New insights into the phylogeny and infrageneric taxonomy of Saussurea based on hybrid capture phylogenomics (Hyb-Seq) by Liansheng Xu, Zhuqiu Song, Tian Li, Zichao Jin, Buyun Zhang, Siyi Du, Shuyuan Liao, Xingjie Zhong, Yousheng Chen

“…For the first time, we recovered a well-resolved nuclear phylogeny of Saussurea consisting of four main clades, which was also supported by morphological data. …”
Get full text

Clonal phylogenies inferred from bulk, single cell, and spatial transcriptomic analysis of epithelial cancers. by Andrew Erickson, Sandy Figiel, Timothy Rajakumar, Srinivasa Rao, Wencheng Yin, Dimitrios Doultsinos, Anette Magnussen, Reema Singh, Ninu Poulose, Richard J Bryant, Olivier Cussenot, Freddie C Hamdy, Dan Woodcock, Ian G Mills, Alastair D Lamb

“…While these inferred SNV and CNV states can be used to resolve clonal phylogenies, however, it is still unknown how faithfully transcript-based tumour phylogenies reconstruct ground truth DNA-based tumour phylogenies. …”
Get full text

Diagnosis of the mechanisms of different types of discordances between phylogenies inferred from nuclear and mitochondrial markers by A. A. Poroshina, D. Y. Sherbakov, T. E. Peretolchina

Subjects: “…disagreements between phylogenies…”
Get full text

Integrative Taxonomy, Phylogeny, and New Species of the Weevil Genus Onyxacalles Stüben (Coleoptera: Curculionidae: Cryptorhynchinae) by Peter E. Stüben, Jonas J. Astrin

“…A molecular phylogeny of the western Palearctic weevil genus Onyxacalles Stüben, 1999 is presented, combining two mitochondrial genes (COI and 16S) in a Bayesian analysis. …”
Get full text

Morphology and multigene phylogeny revealed four new species of Geastrum (Geastrales, Basidiomycota) from China by Xin Yang, Yonggao Zhu, Songjing Duan, Xingxing Wu, Changlin Zhao

Get full text

Analysis of the ASMT Gene Family in Pepper (Capsicum annuum L.): Identification, Phylogeny, and Expression Profiles by Luzhao Pan, Jiaqiu Zheng, Jia Liu, Jun Guo, Fawan Liu, Lecheng Liu, Hongjian Wan

Get full text

Phylogeny of the planthopper genus Megamelus (Hemiptera, Delphacidae), with the description of two new species from South America by Nicolas A. Salinas, Roxana Mariani, Ana M. Marino de Remes Lenicov, Marcela S. Rodriguero, Alejandro J. Sosa

Get full text

Two new species of Plagiostomum (Prolecithophora, Plagiostomidae) from China with its morphology, phylogeny, and reproductive strategy by Leyuan Feng, Shiyan Zhang, Ming Tao, Ting Sun, Antai Wang

Subjects: Get full text

The first two mitochondrial genomes for the genus Ramaria reveal mitochondrial genome evolution of Ramaria and phylogeny of Basidiomycota by Qiang Li, Lijiao Li, Ting Zhang, Peng Xiang, Qian Wu, Wenying Tu, Zhijie Bao, Liang Zou, Cheng Chen

Get full text

The plastid and mitochondrial genomes of <i>Vavilovia Formosa</i> (Stev.) Fed. and the phylogeny of related legume genera by N. V. Shatskaya, V. S. Bogdanova, O. E. Kosterin, G. V. Vasiliev, A. K. Kimeklis, E. E. Andronov, N. A. Provorov

Subjects: Get full text

Formation et phylogénie des concepts de « marché » dans l’économie politique au xviiie siècle by Pascal Charbonnat

Subjects: Get full text

Multilocus phylogenies reveal three new truffle-like taxa and the traces of interspecific hybridization in Octaviania (Boletaceae, Boletales) by Takamichi Orihara, Rosanne Healy, Adriana Corrales, Matthew E. Smith

Get full text

Insight into the phylogeny and antibiotic resistance of Pseudomonas spp. originating from soil of the Białowieża National Park in Northeastern Poland by Wioleta Lewandowska, Wioleta Lewandowska, Jacques Mahillon, Justyna Małgorzata Drewnowska, Izabela Swiecicka, Izabela Swiecicka

Subjects: Get full text

Phylogeny-based comparative analysis of gene expression modulation upon drought stress across three cotton diploids by Tong Huan, Xinyu Zhang, Minghua Lv, Haotian Zhou, Yanyan Zhao, Dongliang Yu, Yuqiang Sun

Get full text

Comparative mitogenome analysis of two ectomycorrhizal fungi (Paxillus) reveals gene rearrangement, intron dynamics, and phylogeny of basidiomycetes by Qiang Li, Yuanhang Ren, Dabing Xiang, Xiaodong Shi, Jianglin Zhao, Lianxin Peng, Gang Zhao

“…This study is the first report on the mitogenomes of Paxillus, which will promote a better understanding of their contrasted ecological strategies, molecular evolution and phylogeny of these important ectomycorrhizal fungi and related basidiomycete species.…”
Get full text

Westerdykella reniformis sp. nov., producing the antibiotic metabolites melinacidin Iv and chetracin B by Ghada A Ebead, David P. Overy, Fabrice Berrué, Russell G. Kerr

Subjects: Get full text

Molecular phylogeny and morphology reveal four new wood-inhabiting fungi of Asterostroma and Radulomyces (Basidiomycota) from Southwestern China by Junhong Dong, Qiaohua Deng, Minglan Chen, Daxiang Chen, Chunqin Zhou, Changlin Zhao

Get full text

Using target enrichment sequencing to study the higher-level phylogeny of the largest lichen-forming fungi family: Parmeliaceae (Ascomycota) by Felix Grewe, Claudio Ametrano, Todd J. Widhelm, Steven Leavitt, Isabel Distefano, Wetchasart Polyiam, David Pizarro, Mats Wedin, Ana Crespo, Pradeep K. Divakar, H. Thorsten Lumbsch

“…We used a target enrichment data set and a qualitative selection method for 250 out of 350 genes to infer the phylogeny of the major clades in this family including 81 taxa, with both subfamilies and all seven major clades previously recognized in the subfamily Parmelioideae. …”
Get full text

Taxonomy of Hyphodermella: a case study to show that simple phylogenies cannot always accurately place species in appropriate genera by Shan Shen, Shi-Liang Liu, Li-Wei Zhou

“…With more and more new species being described, the placements of their generic position are sometimes incorrect due to the simple phylogenies resulting from inappropriate sampling. Here, we focus on the taxonomy of a small wood-inhabiting fungal genus Hyphodermella. …”
Get full text