A Novel Method for Functional Annotation Prediction Based on Combination of Classification Methods by Jaehee Jung, Heung Ki Lee, Gangman Yi

“…Moreover, we used gene ontology (GO), which is the controlled vocabulary used to comprehensively describe the protein function. …”
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A semi-automatic cell type annotation method for single-cell RNA sequencing dataset by Wan Kim, Sung Min Yoon, Sangsoo Kim

“…Annotating the 35 t-stochastic neighbor embedding clusters into 12 cell types was straightforward, and its accuracy was evaluated by constructing co-expression network for each cell type. Gene Ontology analysis was congruent with the annotated cell type and the corollary regulatory network analysis showed upstream transcription factors that have well supported literature evidences. …”
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Biens publics : construction économique et registres sociaux by Philippe Boudes, Catherine Darrot

“…On the other hand, we associate to the conceptual and economic reality of public goods a normative dimension and ontological dimension. These distinctions, which we observe as recurrent in the work of analysis of public goods, reflect the diversity of frameworks used to define these goods. …”
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In Silico Genome Comparison and Distribution Analysis of Simple Sequences Repeats in Cassava by Andrea Vásquez, Camilo López

“…Sequences containing SSRs were classified according to their functional annotation of Gene Ontology categories. The identified SSRs here may be a valuable addition for genetic mapping and future studies in phylogenetic analyses and genomic evolution.…”
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Identifying the Prophetic Legal Ethos in the Death Penalty Provisions of the Indonesian Criminal Code by Basto Daeng Robo

“…The concepts of humanization, liberation, and transcendence serve as foundational elements of the philosophical framework of prophetic law, which coherently and sequentially aligns with the structures of ontology, epistemology, and axiology. These concepts are employed as benchmarks to identify the prophetic legal ethos embedded within the death penalty provisions of the Indonesian Criminal Code. …”
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Mapping transcriptomic profiles of seminal vesiculitis and experimental verification by Chenkui Miao, Shaobo Zhang, Jiajin Wu, Meiling Bao, Zengjun Wang, Bianjiang Liu

“…We identified enriched Go Ontology terms, pathway maps, processes, toxicity, and metabolic networks of seminal vesiculitis. …”
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Using Network Pharmacology to Explore the Mechanism of Panax notoginseng in the Treatment of Myocardial Fibrosis by Jingxue Han, Jingyi Hou, Yu Liu, Peng Liu, Tingting Zhao, Xinwei Wang

“…This was followed by Gene Ontology and pathway enrichment analyses. Molecular docking then verified the results of network analysis. …”
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Rethinking contending themes in indigenous and Christian religions in contemporary Africa by O.C. Eze, L.I. Ugbudian, T.A. Adihikon, S.O.S. Nnabuchi, J.U. Eke, C.J. Okolo

“…In the vast majority of deficit-prone literature, such themes as symbolism, liturgy, sacrifice, saints, sinners, and ontology, among others, are far from balanced. The extant gap has further increased the befuddling perception of African traditional religion by indigenous Christians as belonging to the “Kingdom of Satan” that needs salvation through the instrumentality of Christianity. …”
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The problem of the knowledge of the thinking substance in the Meditations and in the Objections and Replies of Rene Descartes by Vinícius França Freitas, Ana Cláudia Teodoro Sousa

“…It is concluded that in the Meditations, Descartes confronts an insurmountable gap between the ontology of substance and its knowledge, which prompts him to further develop and clarify his theory in later writings. …”
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EpigenomeViewer: A Shiny Web Application for Visualizing Methylation Patterns Across Biological Samples by Nurul Syakima Ab Mutalib

“…Future developments include expanded support for multi-omics data and additional gene ontology features. …”
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Understanding the Molecular Mechanisms of Incomptine A in Treating Non-Hodgkin Lymphoma Associated with U-937 Cells: Bioinformatics Approaches, Part I by Fernando Calzada, Normand García-Hernández, Elihú Bautista, José Manuel Sánchez-López, Miguel Valdes, Claudia Velázquez, Elizabeth Barbosa

“…<b>Methods</b>: Five approaches, including Tandem Mass Tag (TMT), Gene ontology (GO), Reactome, KEGG pathway analysis, and molecular docking, were used. …”
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Network and systems biology approaches help investigate gene regulatory interactions between Salmonella disease and host in chickens: Model‐based in silico evidence combined with g... by Reza Tohidi, Hoda Javaheri Bargourooshi, Arash Javanmard

“…Objectives This study aims to identify the most important immune‐related genes and their signalling pathways (gene ontology, co‐expression and interactions) and to analyse their accumulation in host‐resistant SE diseases by combining gene expression assays with model‐based in silico evidence. …”
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Personalized Recommendation Model of High-Quality Education Resources for College Students Based on Data Mining by Chaohua Fang, Qiuyun Lu

“…Among them, the preference model of the learner is constructed using the ontology, and the semantic relation between the knowledge is better understood, and the interest of the student learning is discovered.…”
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DIALOGO PROBLEMOS SPRENDIMO PRIELAIDOS EDMUNDO HUSSERLIO INTERSUBJEKTYVUMO TEORIJOJE by Mintautas Gutauskas

“…Keywords: dialogue, social ontology, intersubjectivity.  …”
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Providing Adapted Contextual Information in an Overlay Vehicular Network by José Santa, Andrés Muñoz, Antonio F. Gómez-Skarmeta

“…This has been carried out by means of an ontology model which represents users' preferences and contextual information. …”
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Cashmere cyclic growth affected by different photoperiods alters DNA methylation patterns by Ruoyang Zhao, Tiecheng Wu, Jun Yin, Tao Wang, Yunmei He, Yahan Wu, Yulin Gao, Bin Liu

“…A total of 9,700 differentially methylated regions (DMRs) and 4,187 genes (DMGs) were identified. Gene Ontology (GO) and KEGG analyses revealed significant enrichment in 67 GO terms and 41 signaling pathways related to circadian rhythms, bringing new insights in the role of DNA methylation in cashmere growth and development.…”
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Global Alignment of Pairwise Protein Interaction Networks for Maximal Common Conserved Patterns by Wenhong Tian, Nagiza F. Samatova

“…The results are evaluated through up-to-date known gene annotations, gene ontology (GO), and KEGG ortholog groups (KO). Comparing to existing tools, our approach is fast with linear computational cost, highly accurate in terms of KO and GO terms specificity and sensitivity, and can be extended to multiple alignments easily.…”
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Mining 3D Patterns from Gene Expression Temporal Data: A New Tricluster Evaluation Measure by David Gutiérrez-Avilés, Cristina Rubio-Escudero

“…Mean Square Residue 3D has been applied to both synthetic and real data and it has proved to be capable of extracting groups of genes with homogeneous patterns in subsets of conditions and times, and these groups have shown a high correlation level and they are also related to their functional annotations extracted from the Gene Ontology project.…”
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Academic Subject Problem: Epistemological Crisis and Its Overcoming by M. B. Sapunov, A. A. Polonnikov

“…The paper focuses on the analysis of ontological, epistemological and pedagogical terms of changes in education, first of all – on the status of an academic subject. …”
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The transcriptomic footprint of Mytella strigata: de novo transcriptome assembly of a major invasive species by V. G. Vysakh, Sandhya Sukumaran, Wilson Sebastian, A. Gopalakrishnan

“…A number of databases were used for functional annotation, including UniProt, KEGG, Reactome, InterPro, and eggNOG. Gene Ontology and pathway analyses identified transcripts associated with key biological processes, including those associated with cell signalling, metabolism, stress responses, cancer pathways, and immune regulation. …”
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