Network Pharmacology Reveals Polyphyllin II as One Hit of Nano Chinese Medicine Monomers against Nasopharyngeal Carcinoma by Meng-Zhe Yang, Bei-Bei Zhang, Jian-Chun Huang, Xian-Yu Bai, Zhen-Qiang Liang, Xiang Yi, Ning Xu, Yuan-Jiao Huang, Ai-Jun Jiao

“…Totally, ninety-four common potential targets for NPC and polyphyllin II were discovered. Gene Ontology (GO) function enrichment analysis showed that biological processes and functions mainly concentrated on apoptotic process, protein phosphorylation, cytosol, protein binding, and ATP binding. …”
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M6A Modification and Transcription Analysis of LncRNA in Cerebral Ischemia/Reperfusion Injury by Jierong Mo, Zhiquan Li, Zhengfei Yang, Zuhua Huang, Pengpeng Guo, Jianfeng Gao, Haiqiong xiao, Ping Ye, Haini Qin, Tianen Zhou, Jun Jiang

“…Venn diagram, Spearman correlation analysis, Gene Ontology (GO), Kyoto Encyclopedia of Genes and Genomes (KEGG) enrichment analysis, TargetScan, and miRanda were used to analyze the experimental data. …”
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Proteomic Analysis of the Murine Liver Response to Oral Exposure to Aflatoxin B1 and Ochratoxin A: The Protective Role to Bioactive Compounds by Silvia Trombetti, Alessandra Cimbalo, Michela Grosso, Pilar Vila-Donat, Jordi Mañes, Lara Manyes

“…For proteomics analysis, peptides were separated using a LC-MS/MS-QTOF system and differentially expressed proteins (DEPs) were statistically filtered (<i>p</i> < 0.05) distinguishing males from females. Gene ontology visualization allowed the identification of proteins involved in important biological processes such as the response to xenobiotic stimuli and liver development. …”
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Proximity Labeling-Based Identification of MGAT3 Substrates and Revelation of the Tumor-Suppressive Role of Bisecting GlcNAc in Breast Cancer via GLA Degradation by Bowen Wang, Xin He, Yue Zhou, Zengqi Tan, Xiang Li, Feng Guan, Lei Lei

“…This approach enriched 116 and 189 proteins, respectively, identifying 17 common substrates shared with bisecting GlcNAc-bearing proteome obtained via intact glycopeptide enrichment methods. Gene ontology analysis revealed that the enriched proteins were predominantly localized in the exosome, endoplasmic reticulum, and Golgi apparatus, consistent with subcellular localization of MGAT3 substrates. …”
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Global Gene Expression Profiling in PPAR-γ Agonist-Treated Kidneys in an Orthologous Rat Model of Human Autosomal Recessive Polycystic Kidney Disease by Daisuke Yoshihara, Masanori Kugita, Tamio Yamaguchi, Harold M. Aukema, Hiroki Kurahashi, Miwa Morita, Yoshiyuki Hiki, James P. Calvet, Darren P. Wallace, Takafumi Toyohara, Takaaki Abe, Shizuko Nagao

“…By Gene Set Enrichment Analysis of 30655 genes, 13 of the top 20 downregulated gene ontology biological process gene sets and six of the top 20 curated gene set canonical pathways identified to be downregulated by PIOtreatment were related to cell cycle and proliferation, including EGF, PDGF and JNK pathways. …”
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A Full-Length Reference Floral Transcriptome of Boehmeria tricuspis Provides Insights into Apomeiosis and Polyploidy by Qing Tang, Ying Xu, Canhui Deng, Chaohua Cheng, Zhigang Dai, Zemao Yang, Chan Liu, Jianguang Su

“…Overall, 1,387 genes related to apomeiosis, 217 genes related to ploidy, and 9 genes associated with both apomixis and ploidy were identified. Gene Ontology analyses of this set of transcripts indicated reproductive genes, especially those related to “cell differentiation” and “cell cycle process,” as significant factors regulating apomeiosis. …”
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Bridging theory and practice in peer-to-peer energy trading: market mechanisms and technological innovations by Pravesh Raghoo, Kalim Shah

“…The paper discusses the challenges that the development and commercialization of the P2P energy trading faces—especially focusing on the social ontology of the concept—and provides research directions to amplify the scaling up of the technology.…”
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Cultural Integrations for Organisational Performance: Synthesising Western Liberal, Sinocentric and Ubuntu perspectives in South African Career Management Services by Shereen Sikwela, Melvin Diedericks

“…These findings underscored the necessity of weakening and integrating strong ontologies through panentheism to enhance economic and employee development, societal order, hierarchy, and communal well-being through structured governance, pluralist choice, collective fingers and societal order frameworks. …”
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MFGE8, ALB, APOB, APOE, SAA1, A2M, and C3 as Novel Biomarkers for Stress Cardiomyopathy by Xiao-Yu Pan, Zai-Wei Zhang

“…Then, the DEGs were used for Gene Ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway enrichment analysis. …”
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METAPHYSICAL REVOLUTION OF DESCARTES AND TRANSFORMATION OF THE ANTHROPOLOGICAL PROJECT by Anatolii M. Malivskyi

“…The subject of attention of the thinker is the tension between sensuality and intelligence, need for truth and tendency to delusion, ontologic tension between Life and Nothing etc.…”
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Elucidating genetic intersections: Co-differentially expressed genes in myasthenia gravis and idiopathic inflammatory myopathies and their role in comorbid pathogenesis by Wenqu Yang, Feng Liang

“…Functional enrichment analyses were performed using Gene Ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG) pathways. …”
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SCIENTIA SACRA IN SUFISM AS WELTANSCHAUUNG CONTEMPORARY MUSLIM SPIRITUALITY by Imron Mustofa

“…The study results confirm that the fundamental problem that represents the relationship between spirituality and modern society is the dualism of the ontology-epistemic framework, as a result of the split understanding between Sufism and its pseudo. …”
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Functional Analysis of Monkeypox and Interrelationship between Monkeypox and COVID-19 by Bioinformatic Analysis by Eun Jung Sohn

“…Enrichment analyses, including KEGG and gene ontology (GO) analyses, were performed to identify the common function of 212 DEGs of GSE36854 and GSE21001. …”
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Implications and Critiques of Quantitative Research: A Systematic Review by Mahendra Sapkota

“…The primary analytical question included conceptualizing quantitative methods and highlighting different dimensions of ontology, validity, reliability, generalizability, and ethical implications. …”
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Alchohol Consumption Practices in the Koryak Community by Lyudmila N. Khakhovskaya

“…The analysed models of behaviour stem from appropriate Koryak epistemology and ontology, which themselves are based on the notion of the ‘other world’ and communication with supernatural entities (spirits). …”
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The African Nationalist Idea of Africa by Tlhabane Mokhine Dan Motaung

“…African nationalism was a response to this ontologically debilitated condition of African personhood resulting from the violence of self-serving European colonial modernity, which created a structured subjugation of the African ‘other.’ …”
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Collaborative Intelligent Environment Perception and Mission Control of Scientific Researchers in Semantic Knowledge Framework Based on Complex Theory by Jingfeng Zhao, Yan Li

“…Based on the design principle of the semantic knowledge framework, this paper puts forward the definition of ontology and semantic relationship of the collaborative system of scientific researchers. …”
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Analysis of exportins expression unveils their prognostic significance in colon adenocarcinoma: insights from public databases by Punita Kalia, Rohini Ravindran Nair, Suresh Singh Yadav

“…Kaplan–Meier plotter, Gene ontology (GO), TIMER, STRING, and KEGG were used to analyse data and draw conclusions. …”
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Searching for the cellular underpinnings of the selective vulnerability to tauopathic insults in Alzheimer’s disease by Justin Torok, Pedro D. Maia, Chaitali Anand, Ashish Raj

“…Further, cell-type distributions were more predictive of end-time-point tau pathology than AD-risk-gene expression. Using gene ontology analysis, we found that the genes that are directly correlated to tau pathology are functionally distinct from those that constitutively embody the vulnerable cells. …”
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Prediction method of 0day attack path based on cyber defense knowledge graph by Cheng SUN, Hao HU, Yingjie YANG, Hongqi ZHANG

“…To solve the difficulty of attack detection caused by the 0day vulnerability, a prediction method of 0day attack path based on cyber defense knowledge graph was proposed.The cyber defense knowledge graph was constructed to refine the discrete security data such as threat, vulnerability and asset into the complete and high-related knowledge format by extracting concepts and entities related to network attack from cyber security ontology research finds and databases.Based on the knowledge integrated by the knowledge graph, assumed and restricted the unknown attributes such as the existence, availability and harmfulness of 0day vulnerabilities, and model the concept of ＆quot;attack＆quot; as a relationship between attacker entities and device entities in the knowledge graph to transform the attack prediction to the link prediction of knowledge graph.According to this, apply path ranking algorithm was applied to mine the potential 0day attack in the target system and construct the 0day attack graph.Predicted the 0day attack path by utilizing the scores output by classifiers as the occurrence probabilities of single step attack and computing the occurrence probabilities of different attack paths.The experimental result shows that with the help of complete knowledge system provided by knowledge graph, the proposed method can reduce the dependence of prediction analysis on expert model and overcome the bad influence of 0day vulnerability to improve the accuracy of 0day attack prediction.And utilizing the characteristic that path ranking algorithm reasons based on the structure of graph can also help to backtrack the reasons of predicting results so as to improve the explainability of predicting.…”
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