CRISPR-Based Programmable Nucleic Acid-Binding Protein Technology Can Specifically Detect Fatal Tropical Disease-Causing Pathogens by Md. Rashidur Rahman, Toma Rani Majumder, Md. Aminul Islam Apu, Alok K. Paul, Afrina Afrose, Biplab Kumar Dash

“…Current advances, including automated multiplexing, ultrasensitive single nucleotide polymorphism (SNP)-based screening, inexpensive paper-based lateral flow readouts, and ease of use in remote global settings, have attracted the scientific community to introduce this technology in nucleic acid-based precise detection of bacterial and viral pathogens at the point of care (POC). …”
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The impact of SLCO1B1 polymorphisms on homocysteine concentrations: evidence for a stronger association in men by Xinyuan Hu, Yanfang Jiang

“…In this study, we investigated the relationship between gene polymorphisms, particularly SLCO1B1 and homocysteine (Hcy) concentrations in ischemic stroke patients, with a focus on identifying potential risk factors for elevated Hcy levels.MethodsA total of 177 ischemic stroke patients, including 99 with single nucleotide polymorphisms (SNPs), underwent pharmacogenomics (PGx) sequencing tests, from September 2022 to November 2023 at the hospital. …”
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RETRACTED ARTICLE: Screening and identification of susceptibility genes for cervical cancer via bioinformatics analysis and the construction of an mitophagy-related genes diagnosti... by Zhang Zhang, Fangfang Chen, Xiaoxiao Deng

“…Method We initially collected a large amount of genomic data, including gene expression profile and single nucleotide polymorphism (SNP) data, from the control group and Cervical cancer (CC) patients. …”
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Yeasts with Fermentative Potential Associated with Fruits of Camu-Camu (Myrciaria dubia, Kunth) from North of Brazilian Amazon by Ítalo Thiago Silveira Rocha Matos, Vanderly Andrade de Souza, Giovana do Rosário D’Angelo, Spartaco Astolfi Filho, Edson Júnior do Carmo, Marcos José Salgado Vital

“…Taxonomic identification was performed by ribosomal gene nucleotide sequence analysis by alignment using BLASTN. …”
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Integrating mitochondrial and lysosomal gene analysis for breast cancer prognosis using machine learning by Huilin Chen, Zhenghui Wang, Jiale Shi, Jinghui Peng

“…Firstly, Differences and correlations of mitochondrial and lysosome related genes were screened and validated by differential analysis, copy number variation (CNV), single nucleotide polymorphism (SNPs) and correlation analysis. …”
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Polygenic burden of short tandem repeat expansions promotes risk for Alzheimer’s disease by Michael H. Guo, Wan-Ping Lee, Badri Vardarajan, Gerard D. Schellenberg, Jennifer E. Phillips-Cremins

“…Abstract Studies of the genetics of Alzheimer’s disease (AD) have largely focused on single nucleotide variants and short insertions/deletions. …”
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VEIKIANTIS GENOMAS - VISUMINIS POŽYMIS: DABARTIES ŽVILGSNIS Į GENETIKĄ by Jonas Rubikas

“…The five methodological levels of investigation could be distinguished during the course of genetics development: the organism - feature; the cell - feature; the chromosome - feature; DNA molecule - feature; nucleotide sequence - function. The methodology of the new level is genomics (DNA microarrays) and proteomes. …”
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Dispensable genome and segmental duplications drive the genome plasticity in Fusarium solani by Abbeah Navasca, Jatinder Singh, Viviana Rivera-Varas, Upinder Gill, Gary Secor, Thomas Baldwin

“…Based on orthogroups and average nucleotide identity, F. solani is not grouped by lifestyle or origin. …”
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Causal effects of retinol and vitamin D on tongue cancer risk: a mendelian randomization study by Jiawei Zhang, Yake Lou, Hong Chen, Xiaofeng Huang

“…Therefore, we aimed to assess the causal relationships of retinol and vitamin D with the risk of tongue cancer using the two-sample Mendelian randomization (MR) method. Methods Single nucleotide polymorphisms (SNPs) related to retinol, vitamin D and tongue cancer were obtained from the up-to-date genome-wide association study (GWAS) catalogue, which was screened for instrumental variables (IVs). …”
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Comparative genomics of thermosynechococcaceae and thermostichaceae: insights into codon usage bias by Qiao-Hui Mou, Zhe Hu, Jing Zhang, Maurycy Daroch, Jie Tang

“…Herein, the CUB and codon context patterns of protein-coding genes were systematically analyzed and compared between members of the two families. Overall, the nucleotide composition and CUB indices were found to differ between thermophiles and non-thermophiles. …”
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Determination of damaging SNP’s in SHANK3 gene with in silico methods by İrem Gülfem Albayrak, Şeyma Yektar, Süeda Kaya

“…Results This research uses in silico approaches such as SIFT, PolyPhen-2, I-Mutant 2.0, and Project HOPE to find harmful SNPs, which are the single nucleotide polymorphisms the most prevalent types of genetic variation in humans, in the SHANK3 gene. …”
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Transcriptome-wide association study identifies genes associated with bladder cancer risk by Siting Li, Jiang Gui, Margaret R. Karagas, Michael N. Passarelli

“…We further assessed associations for individual single-nucleotide polymorphisms (SNPs) used to predict expression levels and proximal loci for genes identified in gene-level analyses with false-discovery rate (FDR) correction. …”
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Genomic and Resistome Analyses of Elizabethkingia anophelis Strain B2D isolated from Dental Plaque of Patient by Share Yuan Goh, Kah-Ooi Chua, Saad Ahmed Khan, Noor Hayaty Abu Kasim, Yvonne Jing Mei Liew, Yin Yin Lau, Kar-Wai Hong, Wai-Fong Yin, Hoi-Sen Yong, Chien-Yi Chang, Kok-Gan Chan

“…An above species level threshold average nucleotide identity value confirmed its taxonomic identity as Elizabethkingia anophelis. …”
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ADAM-multi: software to simulate complex breeding programs for animals and plants with different ploidy levels and generalized genotypic effect models to account for multiple allel... by Thinh Tuan Chu, Thinh Tuan Chu, Just Jensen

“…While the bi-allelic state of marker loci is due to the common choice of genotyping technology of single nucleotide polymorphism (SNP) chip, the assumption may not hold for the linked QTL. …”
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The Alpaca Melanocortin 1 Receptor: Gene Mutations, Transcripts, and Relative Levels of Expression in Ventral Skin Biopsies by Bathrachalam Chandramohan, Carlo Renieri, Vincenzo La Manna, Antonietta La Terza

“…The objectives of the present study were to characterize the MC1R gene, its transcripts and the single nucleotide polymorphisms (SNPs) associated with coat color in alpaca. …”
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Prostate Cancer Susceptibility Loci Identified in GATA2 and ZMIZ1 in Chinese Population by Hui-Jing Zhang, Zhongyuan Liu, Liang Kan

“…A total of 235 PCa patients and 252 control subjects (all unrelated) were enrolled in this case-control PCa study. Nine single nucleotide polymorphisms (SNPs) were genotyped in GATA2 (rs73862213, rs2335052, and rs10934857), ZMIZ1 (rs704017, rs77911174, and rs3740259), and SUN2 (rs78397383, rs5750680, and rs138705) genes. …”
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Systematic characterization of all Toxoplasma gondii TBC domain-containing proteins identifies an essential regulator of Rab2 in the secretory pathway. by Justin J Quan, Lachezar A Nikolov, Jihui Sha, James A Wohlschlegel, Isabelle Coppens, Peter J Bradley

“…Rab GTPases are major regulators of the parasite's secretory traffic that function as nucleotide-dependent molecular switches to control vesicle trafficking. …”
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Assessing the potential of land use and land cover changes on the genetic diversity of goitered gazelle (Gazella subgutturosa) in the southern slopes of the Alborz Mountain range,... by Mojgan Asadollahi, Mostafa Keshtkar, Faraham Ahmadzadeh

“…The results showed an alarming paucity of nucleotide diversity (0.0019) within these populations. …”
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Association of the EPAS1 gene G/A polymorphism with successful performance in a group of Russian wrestlers by E. A. Bondareva, E. Z. Godina

“…The genotype of a single nucleotide G/A polymorphic system of the EPAS1 gene was determined for each participant of the study. …”
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Unlocking genetic diversity for low-input systems in a changing climate through participatory characterization and GWAS of lentil landraces by Elisa Lorenzetti, Mercy Wairimu Macharia, Svenja Mager, Matteo Dell’Acqua, Stefano Carlesi, Paolo Bàrberi

“…Meanwhile, we genotyped the landrace collection with a DNA sequencing approach, obtaining 91,136 high quality single nucleotide polymorphisms (SNPs). We used SNPs to describe the phylogenetic relation among landraces, unveiling their uniqueness, and combined SNP data with measured traits to conduct a genome-wide association study (GWAS) that led to the identification of 32 unique marker-trait associations highlighting lentil genomic loci related with adaptation and performance. …”
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