Clinico¬pathological features and phylogenetic analysis of rabies infection in local Iraqi breed cattle by M. H. Hussain, Kh. A. Mansour, S. A. A. Al-Redah, A. J. Abid

“…The phylogenetic analysis revealed variations at a total of 24 places in multiple sequence alignments between two field rabies virus nucleotide sequences from the current investigation (>MW893685 and >MW893684) and 48 GenBank nucleotide sequences, including the reference strain (>NC_001542). …”

Analysis of Amino Acid Changes in the Fusion Protein of Virulent Newcastle Disease Virus from Vaccinated Poultry in Nigerian Isolates by Olubukola O. Funsho-Sanni, Elijah E. Ella, Lawal D. Rogo, Olufunsho S. Sanni, Helen I. Inabo, Sodangi A. Luka, Ismaila Shittu

“…The range of percentage nucleotide and amino acid homology between the study isolates and commercially available vaccine strains is 81.14%–84.39% and 0.175–0.211, respectively. …”
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Comparison of the evolutionary patterns of DNA repeats in ancient and young invertebrate species flocks of Lake Baikal by Wang Yuxiang, T. E. Peretolchina, E. V. Romanova, D. Y. Sherbakov

“…The topology of this tree was compared to the phylogenies inferred for the same species from the concatenated protein-coding mitochondrial nucleotide sequences. In all species analyzed, the fraction of DNA repeats involved circa half of the genome. …”
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Comparative organelle genomics in Daphniphyllaceae reveal phylogenetic position and organelle structure evolution by Rongxiang Zhang, Ying Liu, Shuwen Liu, Yuemei Zhao, Niyan Xiang, Xiaoman Gao, Tao Yuan

“…The plastome had a more conserved structure but a faster nucleotide substitution rate, and the mitogenome showed a more complex structure while the mitotic genome shows a more complex structure but a slower nucleotide substitution rate. …”
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Rational Primer and Probe Construction in PCR-Based Assays for the Efficient Diagnosis of Drifting Variants of SARS-CoV-2 by Divya RSJB Rana, Nischal Pokhrel, Santosh Dulal

“…In this study, we have utilized in silico-based bioinformatic tools where the alignment for genes, the positions and types of SNPs/mutations of VOCs, and the relative number of SNPs per nucleotide in different genomic regions were investigated. …”
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The role of inflammasomes in hepatocellular carcinoma: Mechanisms and therapeutic insights by Valentina Arrè, Roberto Negro, Gianluigi Giannelli

“…Among others, the inflammasome Nucleotide-binding oligomerization domain, Leucine rich Repeat (NLR) and Pyrin (NLRP) 3 (NLRP3), and absent in melanoma 2 (AIM2), exhibit a dual role in HCC background. …”
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Molecular Detection and Phylogenetic Analysis of the alkB Gene in Klebsiella oxytoca Strains Isolated from the Gut of Tenebrio molitor by Tsitsi Lynn Mupamhadzi, Oleen Machona, Farisai Chidzwondo, Rumbidzai Mangoyi

“…To detect the presence of the alkB gene in the isolated bacterial strains, a set of primers used in the amplification of this gene was manually designed from the conserved regions of the alkB nucleotide sequences of eleven bacterial species from GenBank. …”
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In-silico screening and analysis of missense SNPs in human CYP3A4/5 affecting drug-enzyme interactions of FDA-approved COVID-19 antiviral drugs by Amro A. Abdelazim, Mohamad Maged, Ahmed I. Abdelmaksoud, Sameh E. Hassanein

“…Abstract Single nucleotide polymorphisms (SNPs) represent the prevailing form of genetic variations observed in the human population. …”
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Pseudocitrobacter cyperus, a novel bacterial species recovered from Cyperus alternifolius in Egypt by Samira M. Hamed, Mai A. Amer

“…To confirm its taxonomic classification, the draft genome of Cyp38ST was generated using DNBseq, and the genome-based taxonomic evaluation was conducted by calculating the overall genome-relatedness indices (OGRIs) such as Average Nucleotide Identity (ANI), digital DNA-DNA hybridization (dDDH), and the tetra-nucleotide signatures (Tetra). …”
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Identification and genetic analysis of the recent Avian pox viruses from infected pigeons and chickens by Amira M. Helal, Osama Mahana, Ali Zanaty, Karim Selim, Mohamed. E. Taha, Mostafa M. Saleh, Mohamed I. Hassan, Mona S. Abdallah

“…The chicken strains exhibited 100% nucleotide identity with commercially available fowl pox virus (FPV) vaccines and were phylogenetically clustered within subclade A1 with other FPVs. …”
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Enhancement of Streptomyces aureoverticillatus HN6 through mutagenesis for improved biocontrol of banana wilt disease: an WGS approach by Xiangnan Yan, Shakil Ahmad, Nazia Manzar, Yunfei Zhang, Coline C. Jaworski, Abhijeet Shankar Kashyap, Lanying Wang, Yanping Luo

“…Comparative genomic analysis revealed the presence of seven single-nucleotide polymorphisms (SNPs), one multiple nucleotide polymorphism (MNP), and three insertion-deletions when comparing the mutant strain E95 with the original strain HN6. …”
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Interpreting Variants of Uncertain Significance in PCD: Abnormal Splicing Caused by a Missense Variant of DNAAF3 by Haixia Zheng, Chongsheng Cheng, Miao He, Wangji Zhou, Yixuan Li, Jinrong Dai, Ting Zhang, Kai‐Feng Xu, Xue Zhang, Xinlun Tian, Yaping Liu

“…Results We identified two variants of DNAAF3: c.557G>A, p.G186E in exon 5, and c.1364G>A, p.G455D at the terminal nucleotide of exon 10 in a 16‐year‐old male patient. …”
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Identification of a new alphacoronavirus (Coronaviridae: <i>Alphacoronavirus</i>) associated with the greater horseshoe bat (<i>Rhinolophus ferrumequinum</i>) in the south of Europ... by Sergey V. Lenshin, Tatyana V. Vishnevskaya, Alexey V. Romashin, Yulia I. Bulycheva, Oleg I. Vyshemirsky, Sophya A. Solovyeva, Asya K. Gitelman, Alexey S. Pazilin, Dmitry K. Lvov, Ben Hu, Zheng-Li Shi, Sergey V. Alkhovsky

“…The virus Showed 72% nucleotide identity to a Cardioderma bat coronavirus from Kenya and up to 67% nucleotide identity to the YN2012 virus group found in horseshoe bats in China. …”
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A DATABASE ON TRANSLATIONAL ENHANCERS TO SUPPORT EXPERIMENTS WITH TRANSGENIC PLANTS by O. G. Smirnova, D. A. Rasskazov, A. V. Kochetov

“…The database is based on the platform of the Sequence Retrieval System (SRS), allowing users to make a rapid search for enhancers with defined properties and retrieve corresponding nucleotide sequences. The database is available at http://wwwmgs.bionet.nsc.ru/mgs/dbases/trsig/…”
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Considerations in the search for epistasis by Marleen Balvert, Johnathan Cooper-Knock, Julian Stamp, Ross P. Byrne, Soufiane Mourragui, Juami van Gils, Stefania Benonisdottir, Johannes Schlüter, Kevin Kenna, Sanne Abeln, Alfredo Iacoangeli, Joséphine T. Daub, Brian L. Browning, Gizem Taş, Jiajing Hu, Yan Wang, Elham Alhathli, Calum Harvey, Luna Pianesi, Sara C. Schulte, Jorge González-Domínguez, Erik Garrisson, Lorentz workshop on epistasis, Michael P. Snyder, Alexander Schönhuth, Letitia M. F. Sng, Natalie A. Twine

“…Abstract Epistasis refers to changes in the effect on phenotype of a unit of genetic information, such as a single nucleotide polymorphism or a gene, dependent on the context of other genetic units. …”
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NOD1: a metabolic modulator by Ruobing Tang, Chunguang Xie, Chunguang Xie, Chunguang Xie, Xiyu Zhang, Xiyu Zhang, Xiyu Zhang

“…Nucleotide-binding oligomerization domain 1 (NOD1) is an intracellular pattern recognition receptor that detects injury signals and initiates inflammatory responses and host defense. …”
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Genetic diversity of Plasmodium falciparum reticulocyte binding protein homologue-5, which is a potential malaria vaccine candidate: baseline data from areas of varying malaria end... by Angelina J. Kisambale, Dativa Pereus, Salehe S. Mandai, Beatus M. Lyimo, Catherine Bakari, Gervas A. Chacha, Ruth B. Mbwambo, Ramadhan Moshi, Daniel A. Petro, Daniel P. Challe, Misago D. Seth, Rashid A. Madebe, Rule Budodo, Sijenunu Aaron, Daniel Mbwambo, Abdallah Lusasi, Stella Kajange, Samwel Lazaro, Ntuli Kapologwe, Celine I. Mandara, Deus S. Ishengoma

“…PCA did not show any population structure and the mean FST value was 0.015. Low nucleotide diversity values were observed across the study sites (mean π = 0.00056). …”
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Osteoarticular Infection in Three Young Thoroughbred Horses Caused by a Novel Gram Negative Cocco-Bacillus by Bernard J. Hudson, Catherine Chicken, Anna Blishen, Kristen H. Todhunter, Angela P. Begg, Leonie Chan, Thomas Karagiannis, Benjamin Raymond, Daniel Bogema, Angus R. Adkins, Christopher B. O’Sullivan, Brendon A. O’Rourke, Piklu Roy Chowdhury, Steven P. Djordjevic, Ian G. Charles, Andrew Edgar, Katerina Mitsakos

“…Analysis by 16S rRNA PCR enabled construction of a phylogenetic tree that placed the isolates closer to Simonsiella and Alysiella species, rather than Kingella species. Average nucleotide identity (ANI) comparison between the new isolate and Kingella kingae and Alysiella crassa however revealed low probability that the new isolate belonged to either of these species. …”
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The rate of weight gain and productivity of chicken broiler cross with various polymorphic types of myostatin gene by N. V. Dementeva, O. V. Mitrofanova, V. I. Tyshchenko, V. P. Terletskiy, A. F. Yakovlev

“…The search for single nucleotide polymorphisms (SNP) in the myostatin gene is a promising direction of research as this gene is involved in the development of important biological and productive traits in chicken. …”
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INFORMACINIS GENOMAS, INDIVIDO IR POPULIACIJOS GENOMAI by Jonas Rubikas

“…In the DNA millions of nucleotide long molecule there is encoded cellular, organism and population information. …”
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