Impact of Microbiota on Irritable Bowel Syndrome Pathogenesis and Management: A Narrative Review by Mhd Bashir Almonajjed, Mahdi Wardeh, Abdallah Atlagh, Abdulrahman Ismaiel, Stefan-Lucian Popa, Flaviu Rusu, Dan L. Dumitrascu

“…Future research should aim to identify reliable microbiota-based biomarkers for IBS and refine microbiome-targeted therapies to enhance patient outcomes.…”
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Using fecal microbiota transplantation for animal health (review) by H. Yu. Drobot, S. K. Shebeko, A. M. Ermakov

“…Thus, the procedure makes it possible to stabilize and maintain a healthy gut microbiome that inhibits the pathogen growth. In veterinary medicine, fecal microbiota transplantation is considered as a potential alternative to traditional antibiotics amid rising antibiotic resistance. …”
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Salutogenic Effects of Greenspace Exposure: An Integrated Biopsychological Perspective on Stress Regulation, Mental and Physical Health in the Urban Population by Varadarajan Suchithra, Herchet Marilisa, Mack Matthias, Hofmann Mathias, Bisle Ellen, Sayer Emma, Kolassa Iris-Tatjana

“…Therefore, by outlining the effects of greenspace exposure on stress parameters such as allostatic load, oxidative stress, mitochondria, and the microbiome, we conceptualize an integrated biopsychological framework to advance research into the salutogenic and stress-regulatory potential of greenspace exposure. …”
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Use of a Food Frequency Questionnaire for the Estimation of Gut Microbiota Composition Based on Dietary Patterns and Its Association with Irritable Bowel Syndrome Symptoms in the L... by Christie J. Bou Chacra, Sofi G. Julien

“…Gut microbiome analysis is costly and poses a significant challenge for determining the gut microbiota composition to facilitate the adoption of personalized nutritional interventions. …”
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Role of Probiotics in the Management of Patients with Ulcerative Colitis and Pouchitis by Francesca Bernardi, Fabrizio Fanizzi, Tommaso Lorenzo Parigi, Alessandra Zilli, Mariangela Allocca, Federica Furfaro, Laurent Peyrin-Biroulet, Silvio Danese, Ferdinando D’Amico

“…Future directions should prioritize advancing research to optimize probiotic therapies and establish personalized approaches based on individual microbiome profiles, highlighting their significant potential as a promising treatment strategy for pouchitis.…”
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12,13-diHOME Promotes Inflammatory Macrophages and Epigenetically Modifies Their Capacity to Respond to Microbes and Allergens by Din L. Lin, Kevin M. Magnaye, Cara E. Porsche, Sophia R. Levan, Elze Rackaityte, Mustafa Özçam, Susan V. Lynch

“…These observations offer plausible mechanisms by which this lipid promotes early-life pathogenic microbiome development and innate immune dysfunction associated with childhood allergic sensitization.…”
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Microbial carbon oxidation in seawater below the hypoxic threshold by Sarah Wolf, Clare Jayawickrama, Craig A. Carlson, Curtis Deutsch, Edward W. Davis, Benjamin N. Daniels, Francis Chan, Stephen J. Giovannoni

“…Microbial amplicon-based community composition diverged between oxic treatments, indicating a specialized microbiome that included Thioglobaceae (SUP05 Gammaproteobacteria), OM190 (Planctomycetota), ABY1 (Patescibacteria), and SAR86 subclade D2472, thrived in the hypoxic treatment, while the genus Candidatus Actinomarina and SAR11 alphaproteobacteria were sharply inhibited. …”
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Taste Preference and Metabolic Rate of Trehalose in Chickens by Fuminori Kawabata, Misako Sakai, Hiroki Murasawa, Yu Komine, Kazuhisa Mukai, Yuko Kawabata

“…Because Tre is utilized by the gut microbiome and enhances gut immunity in chickens, it is used as a feed ingredient. …”
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Gut microbiota in the association between obesity and kidney function decline: a metagenomics-based study in a rat model by Akehu Alemasi, Lijiang Gu, Yilun Zhou

“…Functional analysis indicated that the gut microbiota in the HFD group primarily correlated with infectious diseases, signal transduction, and signaling molecules and interactions.Conclusions This study provides evidence that the consumption of a HFD induces modifications in the composition and functionality of the gut microbiome in rats, which may serve as a potential mechanism underlying the relationship between obesity and the progression of kidney function decline.…”
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Unexpected scarcity of ANME archaea in hydrocarbon seeps within Monterey Bay by A. C. Semler, A. E. Dekas

“…<p>Marine hydrocarbon seeps typically harbor a relatively predictable microbiome, including anaerobic methanotrophic (ANME) archaea. …”
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Experimental trichuriasis: Changes in the immune response and bacterial translocation during acute phase development illustrated with 3D model animation. by Dayane Alvarinho de Oliveira, Renato Oliveira, Brunna Vianna Braga, Lorian Cobra Straker, Luciana Silva Rodrigues, Lilian Lacerda Bueno, Ricardo Toshio Fujiwara, Eduardo José Lopes-Torres

“…This study provides significant insights into the immunological and pathological mechanisms of trichuriasis progression, highlighting the complex interplay among host immune responses, the gut microbiome, and parasite survival strategies, all of which are crucial aspects for future therapeutic development.…”
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Use of Tick Cell Lines in Co-Infection Studies with a Preliminary Study of Co-Culture of <i>Borrelia burgdorferi</i> and <i>Anaplasma phagocytophilum</i> by Violetta Zając, Lesley Bell-Sakyi, Angelina Wójcik-Fatla

“…Previous studies have demonstrated the usefulness of tick cell lines in studies on co-infection of different pathogens and their interaction with the tick microbiome. We also carried out a preliminary study to investigate the effects of co-culturing <i>Borrelia burgdorferi</i> and <i>Anaplasma phagocytophilum</i> on their growth and interactions with the <i>Ixodes ricinus</i> cell line IRE/CTVM19 over a 13-day period. …”
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Profiling bacterial communities of irrigation water and leafy green vegetables produced by small-scale farms and sold in informal settlements in South Africa by D. M. Kgoale, J. K. Gokul, S. Duvenage, E. M. Du Plessis, L. Korsten

“…These findings suggest that the edible plant microbiome can play an important role as transient contributor to the human gut and has the potential to affect overall health.…”
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Single-cell multiomics reveal divergent effects of DNMT3A- and TET2-mutant clonal hematopoiesis in inflammatory response by Wazim Mohammed Ismail, Jenna A. Fernandez, Moritz Binder, Terra L. Lasho, Minsuk Kim, Susan M. Geyer, Amelia Mazzone, Christy M. Finke, Abhishek A. Mangaonkar, Jeong-Heon Lee, Liguo Wang, Kwan Hyun Kim, Vernadette A. Simon, Fariborz Rakhshan Rohakthar, Amik Munankarmy, Seul Kee Byeon, Susan M. Schwager, Jonathan J. Harrington, Melissa R. Snyder, Keith D. Robertson, Akhilesh Pandey, Eric D. Wieben, Nicholas Chia, Alexandre Gaspar-Maia, Mrinal M. Patnaik

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The Mast Cell-Aryl Hydrocarbon Receptor Interplay at the Host-Microbe Interface by Claudio Costantini, Giorgia Renga, Vasilis Oikonomou, Giuseppe Paolicelli, Monica Borghi, Marilena Pariano, Antonella De Luca, Matteo Puccetti, Claudia Stincardini, Paolo Mosci, Andrea Bartoli, Teresa Zelante, Luigina Romani

“…Among the environmental components able to mold mast cells and fine-tune their effector functions, the microorganisms that colonize the human body, collectively known as microbiome, certainly play a key role. Indeed, microorganisms can regulate not only the survival, recruitment, and maturation of mast cells but also their activity by setting the threshold required for the exploitation of their different effector functions. …”
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From Cure to Crisis: Understanding the Evolution of Antibiotic-Resistant Bacteria in Human Microbiota by Hamed Tahmasebi, Neda Arjmand, Marzieh Monemi, Ali Babaeizad, Farnaz Alibabaei, Negar Alibabaei, Aisa Bahar, Valentyn Oksenych, Majid Eslami

“…The growing prevalence of antibiotic-resistant bacteria within the human microbiome has become a pressing global health crisis. …”
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Metadag: a web tool to generate and analyse metabolic networks by Pere Palmer-Rodríguez, Ricardo Alberich, Mariana Reyes-Prieto, José A. Castro, Mercè Llabrés

“…In an eukaryotic analysis, it successfully classified organisms from the KEGG database at the kingdom and phylum levels. In a microbiome study, MetaDAG accurately distinguished between Western and Korean diets and categorized individuals by weight loss outcomes based on dietary interventions. …”
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Fecal occult blood affects intestinal microbial community structure in colorectal cancer by Wu Guodong, Wu Yinhang, Wu Xinyue, Shen Hong, Chu Jian, Qu Zhanbo, Han Shuwen

“…When predicting CRC risk based on gut microbiome, considering the influence of FOBT is expected to improve the accuracy of CRC risk prediction.…”
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Effects of proton pump inhibitor (PPI) use on migraine – a critical review by Viktoria Tischler-Strasser, Irma Burdiladze, Goncalo Cabral, Esme Ekizoglu, Olga Grodzka, Keshet Pardo, Patryk Sochan, Laura Zaunandra, Antoinette MaassenVanDenBrink, Christian Lampl, on behalf of the European Headache Federation School of Advanced Studies (EHF-SAS)

“…The influence of genetics, environment, gut microbiome, medication intake and evolution of headache is multidirectional. …”
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Long-Term Use of Antibiotics and Risk of Parkinson’s Disease in the Nurses’ Health Study by Natalia Palacios, Éilis J O’Reilly, Michael A. Schwarzschild, Alberto Ascherio

“…Antibiotic use is one of the strongest environmental predictors of an altered and less diverse gut microbiome, which has been linked to Parkinson’s disease. …”
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