Conceptualizing Human Microbiota: From Multicelled Organ to Ecological Community by Betsy Foxman, Deborah Goldberg, Courtney Murdock, Chuanwu Xi, Janet R. Gilsdorf

“…The microbiota of a typical, healthy human contains 10 times as many cells as the human body and incorporates bacteria, viruses, archea, protozoans, and fungi. This diverse microbiome (the collective genomes of the microbial symbionts that inhabit a human host) is essential for human functioning. …”
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Modulatory effects in circadian-related diseases via the reciprocity of tea polyphenols and intestinal microbiota by Ruonan Yan, Chi-Tang Ho, Xin Zhang

“…The two-way relationship between the host’s circadian rhythm and intestinal microbiota confirms the possibility that prebiotics or probiotic can be used to adjust the intestinal environment and microbiome composition to improve the host health. This article reviews the relationship between the host’s circadian rhythm and microbiota and its influence on metabolic diseases. …”
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Sarcopenia and cachexia: molecular mechanisms and therapeutic interventions by Tiantian Wang, Dong Zhou, Zhen Hong

“…This review discusses the muscle microenvironment's changes contributing to these conditions, recent therapeutic approaches like lifestyle modifications, small molecules, and nutritional interventions, and emerging strategies such as gene editing, stem cell therapy, and gut microbiome modulation. We also address the challenges and opportunities of multimodal interventions, aiming to provide insights into the pathogenesis and molecular mechanisms of sarcopenia and cachexia, ultimately aiding in innovative strategy development and improved treatments.…”
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Autoimmune Hepatitis—Immunologically Triggered Liver Pathogenesis—Diagnostic and Therapeutic Strategies by Elisabeth Sucher, Robert Sucher, Tanja Gradistanac, Gerald Brandacher, Stefan Schneeberger, Thomas Berg

“…Current experimental investigations of T cell-mediated autoimmune pathways and analysis of changes within the intestinal microbiome might advance our knowledge on the pathogenesis of AIH and trigger a spark of hope for novel therapeutic strategies.…”
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Selective Induced Altered Coccidians to Immunize and Prevent Enteritis by Helieh S. Oz

“…Microbiomic flora in digestive tract is pivotal to the state of our health and disease. …”
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Nutrition and Helicobacter pylori: Host Diet and Nutritional Immunity Influence Bacterial Virulence and Disease Outcome by Kathryn P. Haley, Jennifer A. Gaddy

“…Lastly, we will discuss how micronutrient availability or alterations in the gastric microbiome may exacerbate negative disease outcomes associated with H. pylori colonization.…”
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Characterizing the omics landscape based on 10,000+ datasets by Eva Brombacher, Oliver Schilling, Clemens Kreutz

“…In this study, we investigate over ten thousand datasets to understand how proteomics, metabolomics, lipidomics, transcriptomics, and microbiome data vary in specific data characteristics. …”
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Would you rather treat? A rare case of Mycobacterium scrofulaceum by Junaid Zafar Sheikh, Nonhlanhla Lunjani, Hira Gul, Louay Kila, Brian Casserly

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Innovative approaches in colorectal cancer screening: advances in detection methods and the role of artificial intelligence by Changwei Duan, Jianqiu Sheng, Xianzong Ma

“…First, the importance of the gut microbiome in CRC progression is discussed, highlighting how specific microbial alterations can serve as biomarkers for early detection, potentially enhancing diagnostic accuracy when combined with traditional screening methods. …”
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Combination of Oxalobacter Formigenes and Veillonella Parvula in Gastrointestinal Microbiota Related to Bile-Acid Metabolism as a Biomarker for Hypertensive Nephropathy by Xin Li, Li Wang, Shaojun Ma, Shaohui Lin, Chunyan Wang, Haiya Wang

“…The human microbiome is a mixed group of microorganisms, which individually consists of 10–100 trillion symbiotic microbial cells. …”
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Iron Homeostasis Dysregulation, Oro-Gastrointestinal Microbial Inflammatory Factors, and Alzheimer’s Disease: A Narrative Review by Agata Kuziak, Piotr Heczko, Agata Pietrzyk, Magdalena Strus

“…Emerging evidence highlights the pivotal roles of iron homeostasis dysregulation and microbial inflammatory factors in the oral and gut microbiome as potential contributors to the pathogenesis of AD. …”
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A quantitative prediction method utilizing whole omics data for biosensing by Takahiko Koizumi, Kenta Suzuki, Inoue Mizuki, Kie Kumaishi, Yasunori Ichihashi

“…Application of OmicSense to single-cell transcriptome, metabolome, and microbiome datasets confirmed high prediction performance (r > 0.8), suggesting applicability to diverse scientific fields. …”
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Comparative analysis of grape berry microbiota uncovers sour rot associates from a Maryland vineyard. by Blaise Jumbam, Magaly Toro, Mengjun Hu

“…It is thus imperative to investigate its role alongside that of other identified core microbiomes in sour rot development. Candida and Pichia were also consistent genera in infected berries. …”
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Comparative analysis of antibiotic resistance genes between fresh pig manure and composted pig manure in winter, China. by Shuai Huang, Minghui Xing, Haifeng Wang

“…Antibiotic resistance is a critical global public health issue. The gut microbiome acts as a reservoir for numerous antibiotic resistance genes (ARGs), which influence both existing and future microbial populations within a community or ecosystem. …”
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Exploring novel pharmacological trends: Natural compounds in dry eye disease management by Rák Tibor, Csutak Adrienne

“…Other strategies, including polyherbal eye drops, liposomal eyelid sprays, and microbiome-supporting solutions offer alternative therapeutic avenues. …”
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New insights into anti-depression effects of bioactive phytochemicals by Ruohan Zhao, Jingwen Wang, Sookja Kim Chung, Baojun Xu

“…Additionally, we summarize the potential mechanisms by which these phytochemicals prevent depression, including regulating neurotransmitters and their receptors, the HPA axis, inflammatory responses, managing oxidative stress, neuroplasticity, and the gut microbiome. Phytochemicals exert therapeutic effects through multiple pathways and targets, making traditional Chinese medicine (TCM) a promising adjunctive antidepressant for the prevention, alleviation, and treatment of depression. …”
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Intratumoral microbiota, fatty acid metabolism, and tumor microenvironment constitute an unresolved trinity in colon adenocarcinoma by Guangyi Liu, Kun Liu, Lei Ji, Yang Li

“…Here, we analyzed intratumoral microbiome samples and matched host transcriptome samples from 420 patients with COAD in The Cancer Genome Atlas (TCGA). …”
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Complex Probiotics Suppress Inflammation by Regulating Intestinal Metabolites in Kittens by Shimin Zhu, Musu Zha, Yanan Xia

“…The juvenile period is a critical stage of cat growth; in particular, the metabolic activity of the intestinal microbiome of kittens is critical for processing nutrients and supporting overall health. …”
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Understanding the Impact of Omega-3 Rich Diet on the Gut Microbiota by Blanca S. Noriega, Marcos A. Sanchez-Gonzalez, Daria Salyakina, Jonathan Coffman

“…Among exogenous factors affecting gut microbiome, diet appears to have the largest effect. …”
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Inflammation, impaired motor function and visceral hypersensitivity: the main mechanisms of functional disorders of the gastrointestinal tract (materials of the Expert Council and... by V. T. Ivashkin, I. V. Maev, A. S. Trukhmanov, A. A. Sheptulin, T. L. Lapina, V. I. Simanenkov, K. A. Sokolov

“…The pathogenesis of the most common functional diseases of the gastrointestinal tract — functional dyspepsia (FD) and irritable bowel syndrome (IBS) is multifactorial and includes motor disorders of various parts of the gastrointestinal tract, visceral hypersensitivity, changes in the intestinal microbiome, impairment of the permeability of the protective barrier, low-grade inflammation of the gastrointestinal mucosa, etc. …”
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