Tetrodotoxin, fungal pathogen infection, and bacterial microbiome associations are variable in the skin microecosystems of two Taricha newt species by Talon Jost, Talon Jost, Alysha Henderson, Brandon LaBumbard, Krisztian Magori, Amber Stokes, Danica Bergin, Autumn Holley, Autumn Holley, Molly Bletz, Molly Bletz, Obed Hernández-Gómez, Gary Bucciarelli, Douglas C. Woodhams, Jonah Piovia-Scott, Jenifer B. Walke

“…In addition, TTX, but not Bd, was significantly correlated with the skin microbiome composition in T. granulosa. In T. torosa, however, Bd, but not TTX, was correlated with the skin microbiome structure. …”
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Exploring the impact of grazing on fecal and soil microbiome dynamics in small ruminants in organic crop-livestock integration systems. by Sejin Cheong, Kimberly Aguirre-Siliezar, Sequoia R Williams, Amélie C M Gaudin, Paulo Pagliari, Michele T Jay-Russell, Roselle Busch, Elizabeth A Maga, Alda F A Pires

“…The results suggest that soil contamination by foodborne pathogens and microbiome dynamics in ICLS are influenced by grazing animal species and regional factors, with interactions between fecal and soil microbial communities having minimal impact.…”
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Effect of intra- and inter-specific plant interactions on the rhizosphere microbiome of a single target plant at different densities. by Derek R Newberger, Heather L Deel, Daniel K Manter, Jorge M Vivanco

“…Root and rhizosphere studies often focus on analyzing single-plant microbiomes, with the literature containing minimum empirical information about the shared rhizosphere microbiome of multiple plants. …”
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Signatures of lower respiratory tract microbiome in children with severe community-acquired pneumonia using shotgun metagenomic sequencing by Ting-Yu Yen, Ching Hsu, Ni-Chung Lee, Chao-Szu Wu, Hsin Wang, Kuan-Yi Lee, Chia-Ray Lin, Chun-Yi Lu, Mo-Li Tsai, Tzu-Yu Liu, Che Lin, Chien-Yu Chen, Luan-Yin Chang, Feipei Lai, Li-Min Huang

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When plastisphere and drilosphere meet: Earthworms facilitate microbiome and nutrient turnover to accelerate biodegradation of agricultural plastic films by Caide Huang, Liuwei Wang, Wei-Min Wu, Yvan Capowiez, Yuhui Qiao, Deyi Hou

“…Additionally, earthworms preferentially consumed recalcitrant dissolved organic matter in LDPE and PBAT/PLA plastisphere soils, thereby increasing the bioavailability of components that serve as nutrient supplies for plastisphere microbiomes. Our findings demonstrate that earthworms enhance the decomposition of plastics in soils via cross-species interplay within the plastisphere and drilosphere, contributing not only to soil conditioning and biodiversity but also to plastic biodegradation in natural agroecosystems.…”
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Obesity-Linked Gut Microbiome Dysbiosis Associated with Derangements in Gut Permeability and Intestinal Cellular Homeostasis Independent of Diet by Ravinder Nagpal, Tiffany M. Newman, Shaohua Wang, Shalini Jain, James F. Lovato, Hariom Yadav

“…This study aimed to determine the association between non-high-fat diet-induced obesity- (non-DIO-) associated gut microbiome dysbiosis with gut abnormalities like cellular turnover of intestinal cells, tight junctions, and mucin formation that can impact gut permeability. …”
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Stubble Management Plays a Greater Role than Tillage Practice in Shaping Soil Microbiome Structure and Function by Chang Xu, Ruey Toh, Jishun Li, Yi Zhou, Matthew D. Denton

“…This study aims to focus on the gaps in our understanding of how tillage and stubble management interact to affect the taxonomic and functional structure of the soil microbiome. Soil samples were collected from a long-term field trial implementing no tillage (NT) and conventional tillage (CT) with stubble retention and removal. …”
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Ketogenic Diet‐Associated Worsening of Osteoarthritis Histologic Secerity, Increased Pain Sensitivity and Gut Microbiome Dysbiosis in Mice by Gabby Dyson, Montana Barrett, Leoni Schlupp, Emmaline Prinz, Nicholas Hannebut, Aleksander Szymczak, Cindy Miranda Brawner, Matlock A. Jeffries

“…KD induces significant gut microbiome dysbiosis in clades previously associated with murine OA.…”
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Assessing the effects of a mixed Eimeria spp. challenge on performance, intestinal integrity, and the gut microbiome of broiler chickens by Danielle Graham, Victor M. Petrone-Garcia, Xochitl Hernandez-Velasco, Makenly E. Coles, Marco A. Juarez-Estrada, Juan D. Latorre, Jianmin Chai, Stephanie Shouse, Jiangchao Zhao, Aaron J. Forga, Roberto Senas-Cuesta, Lauren Laverty, Kristen Martin, Carolina Trujillo-Peralta, Ileana Loeza, Latasha S. Gray, Billy M. Hargis, Guillermo Tellez-Isaias

“…A mixed Eimeria spp. challenge model was designed to assess the effects of challenge on broiler chicken performance, intestinal integrity, and the gut microbiome for future use to evaluate alternative strategies for controlling coccidiosis in broiler chickens. …”
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Fecal Microbiome and Metabolomic Profiles of Mixed-Fed Infants Are More Similar to Formula-Fed than Breastfed Infants by Mei Wang, Negin Valizadegan, Christopher J. Fields, Sharon M. Donovan

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The Cellient System for Paraffin Histology Can Be Combined with HPV Testing and Morphotyping the Vaginal Microbiome Thanks to BoonFixing by Mathilde E. Boon

“…In two additional studies it was shown that such samples can also be used for morphotyping the vaginal microbiome and preparing cytologic ThinPrep slides.…”
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Appearance of green tea compounds in plasma following acute green tea consumption is modulated by the gut microbiome in mice by John D. Sterrett, Kevin D. Quinn, Katrina A. Doenges, Nichole M. Nusbacher, Cassandra L. Levens, Mike L. Armstrong, Richard M. Reisdorph, Harry Smith, Laura M. Saba, Kristine A. Kuhn, Catherine A. Lozupone, Nichole A. Reisdorph

Subjects: “…microbiome…”
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Artificial intelligence in soil microbiome analysis: a potential application in predicting and enhancing soil health—a review by Roberta Pace, Vincenzo Schiano Di Cola, Maurilia Maria Monti, Antonio Affinito, Salvatore Cuomo, Francesco Loreto, Michelina Ruocco

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Supplementation with Complex Phytonutrients Enhances Rumen Barrier Function and Growth Performance of Lambs by Regulating Rumen Microbiome and Metabolome by Juan Du, Yuan Wang, Shaohui Su, Wenwen Wang, Tao Guo, Yuchao Hu, Na Yin, Xiaoping An, Jingwei Qi, Xuan Xu

“…Our findings suggest that adding CPS to lambs’ diets has widespread positive impacts, including improved growth performance, reduced inflammation and mRNA relative expression of apoptosis-related genes, enhanced barrier function, and beneficial changes in the rumen microbiome and metabolite profiles.…”
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Exploring the functional diversity and metabolic activities of the human gut microbiome in Thai adults in response to a prebiotic diet by Amornthep Kingkaw, Preecha Patumcharoenpol, Narissara Suratannon, Massalin Nakphaichit, Sittiruk Roytrakul, Wanwipa Vongsangnak

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Within-species variation in the gut microbiome of medaka (Oryzias latipes) is driven by the interaction of light intensity and genetic background by Evangelista, Charlotte, Kamenova, Stefaniya, Diaz Pauli, Beatriz, Sandkjenn, Joakim, Vøllestad, Leif Asbjørn, Edeline, Eric, Trosvik, Pål, de Muinck, Eric Jacques

“…Here, we aimed to evaluate whether an evolutionary response to size-selective mortality influences the gut microbiome of medaka (Oryzias latipes), how environmental conditions interact with the genetic background of medaka on their microbiota, and the association between microbiome diversity and medaka growth-related traits. …”
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Comparative analysis of the human microbiome from four different regions of China and machine learning-based geographical inference by Yinlei Lei, Min Li, Han Zhang, Yu Deng, Xinyu Dong, Pengyu Chen, Ye Li, Suhua Zhang, Chengtao Li, Shouyu Wang, Ruiyang Tao

Subjects: “…human microbiome…”
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Unraveling the distinctive gut microbiome of khulans (Equus hemionus hemionus) in comparison to their drinking water and closely related equids by Víctor Hugo Jarquín-Díaz, Anisha Dayaram, Eirini S. Soilemetzidou, Amelie Desvars-Larrive, Julia Bohner, Bayarbaatar Buuveibaatar, Petra Kaczensky, Chris Walzer, Alex D. Greenwood, Ulrike Löber

Subjects: “…Microbiome…”
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De-biasing microbiome sequencing data: bacterial morphology-based correction of extraction bias and correlates of chimera formation by Luise Rauer, Amedeo De Tomassi, Christian L. Müller, Claudia Hülpüsch, Claudia Traidl-Hoffmann, Matthias Reiger, Avidan U. Neumann

“…Microbiome…”
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Gut Microbiome Modulation in Hepatocellular Carcinoma: Preventive Role in NAFLD/NASH Progression and Potential Applications in Immunotherapy-Based Strategies by Elisa Monti, Clara Vianello, Ilaria Leoni, Giuseppe Galvani, Annalisa Lippolis, Federica D’Amico, Sara Roggiani, Claudio Stefanelli, Silvia Turroni, Francesca Fornari

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