Analysis of whole-genome binding patterns of GAGA and CNC transcription factors during Drosophila melanogaster development by I. I. Brusentsov, D. A. Karagodin, E. M. Baricheva, T. I. Merkulova

“…On the basis of available data of ChIP-seq and ChIPchip experiments performed using antibodies against GAGA and CNC transcription factors, genome-wide binding mapping of these factors at hours 0–12 and 16–24 of Drosophila embryogenesis, as well as on white pre-pupae stage, was conducted. …”
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Performing whole-genome association analysis of winter wheat plant height using the 55K chip by Yindeng Ding, Guiqiang Fan, Yonghong Gao, Tianrong Huang, Anding Zhou, Shan Yu, Lianjia Zhao, Xiaolei Shi, Sunlei Ding, Jiahao Hao, Wei Wang, Jikun Song, Na Sun, Hui Fang

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Cowpea genetic diversity, population structure and genome-wide association studies in Malawi: insights for breeding programs by Michael M. Chipeta, John Kafwambira, Esnart Yohane

“…The research aimed to understand the genetic diversity and population structure of cowpea and to perform genome-wide association studies (GWAS) to identify marker-trait associations (MTAs) for yield and related traits. …”
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Uncovering genetic determinants of antioxidant properties in Thai landrace rice through genome-wide association analysis by Putut Rakhmad Purnama, Pipob Suwanchaikasem, Supaporn Junbuathong, Somsong Chotechuen, Peerapon Moung-Ngam, Waraluk Kasettranan, Chanita Paliyavuth, Monnat Pongpanich, Sittiruk Roytrakul, Luca Comai, Teerapong Buaboocha, Supachitra Chadchawan

“…Single nucleotide polymorphisms (SNPs) in 233 rice cultivars, 119,541 SNPs from the promoters, and the first 5 exons of all genes were associated with antioxidant phenotypes determined using 2,2’-azino-bis (3-ethylbenzothiazoline-6-sulfonic acid), 2,2-diphenyl-1-picrylhydrazyl, ferric reducing antioxidant power, total flavonoid content, and total phenolic content assays through a mixed linear model (MLM) genome-wide association study (GWAS). GWAS analysis detected 336 quantitative trait nucleotides located at 93 loci, 83% of which were consistently mapped to the reported quantitative trait loci of antioxidant traits. …”
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Diagnosis and genomic characterization of the largest western equine encephalitis virus outbreak in Uruguay during 2023–2024 by Gonzalo Tomás, Ana Marandino, Sirley Rodríguez, Gabriel Luz Wallau, Filipe Zimmer Dezordi, André Luiz Sá de Oliveira, Claudia Techera, Lucía Calleros, Sofía Grecco, Joaquín Williman, Ramiro Pérez, Lucía Bassetti, Raúl Negro, Lucía Moreira Marrero, Adriana Delfraro, Roberto Vidal, Yanina Panzera, Ruben Pérez

“…We identified and genetically characterized Uruguayan strains during this outbreak to understand their evolutionary trends and rapid expansion. We obtained genomes from 15 strains using a novel multiplex PCR assay combined with next-generation Illumina sequencing. …”
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Signatures of selection and candidate genes for adaptation to extreme environmental factors in the genomes of Turano-Mongolian cattle breeds by N. S. Yudin, A. A. Yurchenko, D. M. Larkin

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Genome-wide analysis in northern Chinese twins identifies twelve new susceptibility loci for pulmonary function by Tong Wang, Weijing Wang, Chunsheng Xu, Xiaocao Tian, Dongfeng Zhang

“…BMC Genomics…”
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Computer analysis of co-localization of transcription factor binding sites in genome by ChIP-seq data by A. I. Dergilev, A. M. Spitsina, I. V. Chadaeva, A. V. Svichkarev, F. M. Naumenko, E. V. Kulakova, E. R. Galieva, E. E. Vityaev, M. Chen, Y. L. Orlov

“…Statistical features of the distribution of transcription factor binding sites in the mouse genome that are obtained by ChIP-seq experiments in embryonic stem cells have been considered. …”
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Complete genome sequence of Pseudarthrobacter sp. NIBRBAC000502770 from coal mine of Hongcheon on Republic of Korea by Min-Kyu Park, Yeong-Jun Park, Myung-Suk Kang, Min-Ha Kim, Soo-Young Kim, Jae-Ho Shin

Subjects: “…Whole genome sequencing…”
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Transforming Medical Education to Make Patient Safety Part of the Genome of a Modern Health Care Worker by Peter Lachman, John Fitzsimons

“…The aim of including patient safety and psychological safety competencies in education curricula is to insert these into the genome of the modern health care worker.…”
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The first two mitochondrial genomes from Apiotrichum reveal mitochondrial evolution and different taxonomic assignment of Trichosporonales by Qiang Li, Wenqi Xiao, Peng Wu, Ting Zhang, Peng Xiang, Qian Wu, Liang Zou, Mingying Gui

“…This study served as the first report on mitogenomes from the genus Apiotrichum, which promotes the understanding of evolution, genomics, and phylogeny of Apiotrichum.…”
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Core-genome guided novel therapeutic targets identification and chimeric vaccine designing against Rickettsia rickettsii by Fizza Arshad, Asifa Sarfraz, Muhammad Shehroz, Umar Nishan, Asia Perveen, Riaz Ullah, Mohamed A. Ibrahim, Mohibullah Shah

“…In order to find new therapeutic targets and create multiepitope vaccines, this study integrated subtractive proteomics with reverse vaccinology. The core genome of R. rickettsii was investigated, resulting in the identification of seven essential, human non-homologous proteins as potential drug targets, as well as four antigenic, non-allergenic proteins suitable for vaccine development. …”
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Genomic epidemiology and phenotypic characterization of Staphylococcus aureus isolated from atopic dermatitis patients in South China by Chao Yang, Xiaowei Chen, Min Li, Wenchang Yuan, Shunguang Li, Dexing Han, Junhui Feng, Haimin Luo, Minling Zheng, Jiaqi Liang, Cha Chen, Pinghua Qu, Song Li

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Exception to the Rule: Genomic Characterization of Naturally Occurring Unusual Vibrio cholerae Strains with a Single Chromosome by Gary Xie, Shannon L. Johnson, Karen W. Davenport, Mathumathi Rajavel, Torsten Waldminghaus, John C. Detter, Patrick S. Chain, Shanmuga Sozhamannan

“…International Journal of Genomics…”
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Synergistic power of genomic selection, assisted reproductive technologies, and gene editing to drive genetic improvement of cattle by Maci L. Mueller, Alison L. Van Eenennaam

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A Short History of the Genome-Wide Association Study: Where We Were and Where We Are Going by Shiro Ikegawa

Subjects: “…genome…”
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Energetic and genomic potential for hydrogenotrophic, formatotrophic, and acetoclastic methanogenesis in surface-expressed serpentinized fluids of the Samail Ophiolite by Alta E. G. Howells, Alta E. G. Howells, Lilja M. Quinn, Lilja M. Quinn, Miguel G. Silva, Miguel G. Silva, Kylie Akiyama, Kylie Akiyama, Lucas M. Fifer, Lucas M. Fifer, Grayson Boyer, Srishti Kashyap, Kirt Robinson, Kirt Robinson, Jared Broddrick, Everett L. Shock, Tori M. Hoehler

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Enhancing diagnostic outcomes in kidney genetic disorders: the KidGen national kidney genomics study protocol by Amali Mallawaarachchi, Hugh McCarthy, Thomas A. Forbes, Kushani Jayasinghe, Chirag Patel, Stephen I. Alexander, Tiffany Boughtwood, Jeffrey Braithwaite, Aron Chakera, Sam Crafter, Ira W. Deveson, Randall Faull, Trudie Harris, Lilian Johnstone, Matthew Jose, Anna Leaver, Melissa H. Little, Daniel MacArthur, Tessa Mattiske, Christine Mincham, Kathy Nicholls, Catherine Quinlan, Michael C. J. Quinn, Gopala Rangan, Jessica Ryan, Cas Simons, Ian Smyth, Madhivanan Sundaram, Peter Trnka, Laura Wedd, Erik Biros, Zornitza Stark, Andrew Mallett

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Evolutionary constrained genes associated with autism spectrum disorder across 2,054 nonhuman primate genomes by Yukiko Kikuchi, Mohammed Uddin, Joris A. Veltman, Sara Wells, Christopher Morris, Marc Woodbury-Smith

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Expression of p120-Catenin Isoforms Correlates with Genomic and Transcriptional Phenotype of Breast Cancer Cell Lines by Joana Paredes, Ana Luísa Correia, Ana Sofia Ribeiro, Fernando Schmitt

“…Results: We observed that the expression of p120-catenin isoforms was associated with the genomic and transcriptional phenotype of breast cancer cells. …”
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