An improved chromosome-level genome assembly and annotation of Hong Kong catfish (Clarias fuscus) by Yu Chen, Xinghua Lin, Dayan Zhou, Yulei Zhang, Qian Wang, Huapu Chen, Dongneng Jiang, Siping Deng, Guangli Li, Peipei Wang, Changxu Tian

“…This study significantly advances the genomic resources available for C. fuscus and supports future molecular breeding and functional genomics research.…”
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Comprehensive genomic and transcriptomic analyses of the anaerobic degradation of microcystin in Alcaligenes faecalis D04 by Fei Yang, Lili Yang, Jia Wei, Tian Ma, Mengna Zhou, Liwen Liao, Junhao Xie, Pengji Zhou

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Genomic insights into multidrug-resistant Acinetobacter baumannii strains isolated from Dhaka, Bangladesh by Sadia Ferdous, K M Shayerul Abedin Shayer, Afia Anjum, Sabbir R. Shuvo, Ishrat Jabeen, Kristi Paul Hridi, A.K.M. Imrul Hassan, Md Imran Khan, Mohammad Fazle Alam Rabbi, Mahmud Hossain, Kazi Nadim Hasan, Sohidul Islam

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Guiding Lights in Genome Editing for Inherited Retinal Disorders: Implications for Gene and Cell Therapy by Carla Sanjurjo-Soriano, Vasiliki Kalatzis

“…New advances in the field of genome editing using Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) and CRISPR-associated protein (Cas) have provided an accurate and efficient way to edit the human genome and represent an appealing alternative for treating IRDs. …”
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The complete mitochondrial genomes of five critical phytopathogenic Bipolaris species: features, evolution, and phylogeny by Xinzheng Song, Yuehua Geng, Chao Xu, Jiaxin Li, Yashuang Guo, Yan Shi, Qingzhou Ma, Qiang Li, Meng Zhang

“…The findings of this study will further advance investigations into the population genetics, evolution, and genomics of Bipolaris species.…”
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Genome-wide association study of the antibody response to <i>Corynebacterium pseudotuberculosis</i> in sheep by J. Kyselová, L. Tichý, J. Marková, A. Gurgul, Z. Sztankóová, K. Vališ, S. Šlosárková, K. Kavanová, M. Beinhauerová, T. Szmatola, T. Szmatola

“…The sheep were classified into healthy and diseased groups based on two different commercial enzyme-linked immunosorbent assay (ELISA) serological antigen tests. Genomic DNA was genotyped with the GeneSeek^® Genomic Profiler™ Ovine 50 K, and 41 301 markers were used for the genome-wide association analysis (GWAS). …”
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Using genomic data and machine learning to predict antibiotic resistance: A tutorial paper by Faye Orcales, Lucy Moctezuma Tan, Meris Johnson-Hagler, John Matthew Suntay, Jameel Ali, Kristiene Recto, Phelan Glenn, Pleuni Pennings

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The Use and Economic Value of the 3K SNP Genomic Test for Calves on Dairy Farms by Albert De Vries, David T. Galligan, John B. Cole

“…The availability of genomic tests is rapidly changing genetics in the dairy industry. …”
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A Chromosomal-Level Genome of Dermatophagoides farinae, a Common Allergenic Mite Species by Rongxuan Hu, Haifeng Huang, Ying Zhou, Yanshan Liu, Yaning Ren, Yuanfen Liao, Cunyin Yuan, Xiaohong Gu, Yubao Cui

“…International Journal of Genomics…”
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Chromosomal genome assembly resolves drug resistance loci in the parasitic nematode Teladorsagia circumcincta. by Jennifer McIntyre, Alison Morrison, Kirsty Maitland, Duncan Berger, Daniel R G Price, Sam Dougan, Dionysis Grigoriadis, Alan Tracey, Nancy Holroyd, Katie Bull, Hannah Rose Vineer, Mike J Glover, Eric R Morgan, Alasdair J Nisbet, Tom N McNeilly, Yvonne Bartley, Neil Sargison, Dave Bartley, Matt Berriman, James A Cotton, Eileen Devaney, Roz Laing, Stephen R Doyle

“…To understand the genetics of drug resistance, we have generated a highly contiguous genome assembly for the UK T. circumcincta isolate, MTci2. …”
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A global Corynebacterium diphtheriae genomic framework sheds light on current diphtheria reemergence by Hennart, Mélanie, Crestani, Chiara, Bridel, Sébastien, Armatys, Nathalie, Brémont, Sylvie, Carmi-Leroy, Annick, Landier, Annie, Passet, Virginie, Fonteneau, Laure, Vaux, Sophie, Toubiana, Julie, Badell, Edgar, Brisse, Sylvain

Subjects: “…diphtheria, genomic sequencing, antimicrobial resistance, virulence, epidemiology, transmission, 2022 reemergence, bioinformatics tool…”
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Network Graph Analysis of Gene-Gene Interactions in Genome-Wide Association Study Data by Sungyoung Lee, Min-Seok Kwon, Taesung Park

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Insights into Omicron: Genomic Characterization and Inpatient Risk Assessment at Single Tertiary Hospital in Indonesia by Turbawaty DK, Komala DR, Andriyoko B

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The Shared and Specific Genes and a Comparative Genomics Analysis within Three Hanseniaspora Strains by Kai Chen, Zhonghuan Tian, Fatang Jiang, Yunjiang Cheng, Chao-an Long

“…International Journal of Genomics…”
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<i>Macrostomum lignano</i> as a model to study the genetics and genomics of parasitic flatworms by K. V. Ustyantsev, V. Yu. Vavilova, A. G. Blinov, E. V. Berezikov

“…All this makes M. lignano amenable to the most modern approaches of forward and reverse genetics, such as transposon insertional mutagenesis and methods of targeted genome editing by the CRISPR/Cas9 system. Due to the availability of an increasing number of genome and transcriptome assemblies of different parasitic flatworm species, new knowledge generated by studying M. lignano can be easily translated to parasitic f latworms with the help of modern bioinformatic methods of comparative genomics and transcriptomics. …”
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A more significant role for insertion sequences in large-scale rearrangements in bacterial genomes by Wing Y. Ngan, Lavisha Parab, Frederic Bertels, Jenna Gallie

“…ABSTRACT Insertion sequences (ISs) are mobile pieces of DNA that are widespread in bacterial genomes. IS movements typically involve (i) excision of the IS element, (ii) cutting of target site DNA, and (iii) IS element insertion. …”
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Genomic and virulent characterization of a duck-associated Salmonella serovar Potsdam from China by Hongli An, Xiamei Kang, Chenhu Huang, Chenghao Jia, Jiaqi Chen, Yingying Huang, Qianzhe Cao, Yan Li, Biao Tang, Min Yue

“…Our study aims to fill this gap by providing genomic features of the antimicrobial resistance and virulence potential of Salmonella isolates from dead duck embryos using whole-genome sequencing and in silico toolkits. …”
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A high-quality chromosome-level genome assembly of the mulberry looper, Phthonandria atrilineata by De-Long Guan, Ying-can Qin, Ya-Zhen Chen, Shi-Hao Zhang, Ji-ping Liu, Hui-Yu Yi, Xiao-Dong Li

“…Despite its ecological and economic importance, knowledge about the genomic background of P. atrilineata remains limited. …”
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Cultivated genome references for protein database construction and high-resolution taxonomic annotation in metaproteomics by Xiaowei Gao, Hewei Liang, Tongyuan Hu, Yuanqiang Zou, Liang Xiao

“…Here, we constructed a protein database DBCGR2 derived from Cultivated Genome Reference 2 (CGR2) and a complete workflow for data analysis. …”
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Generation of Whole-Genome Sequencing Data for Comparing Primary and Castration-Resistant Prostate Cancer by Jong-Lyul Park, Seon-Kyu Kim, Jeong-Hwan Kim, Seok Joong Yun, Wun-Jae Kim, Won Tae Kim, Pildu Jeong, Ho Won Kang, Seon-Young Kim

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